barSeed - Barley Seed Development Database

Probe CUST_37184_PI390587928

Source Contig U35_2223

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_37184_PI390587928	Hv_44K_v2	TGTTTCGTGTTTCGGCTTAGGCCAACTCCAACGCATGACTCAAACGAACGTCTATTTTTT	1079	GeneList: salmon MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	4.517	3.869	1.539	0.758	0.491	0.657
Raw	66.395	93.564	32.923	22.262	4.665	7.675

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_73664.1	900	7e-23	176 - 236	98	60 / 61	minus	ABC02813
JLOC1	JLOC1_49042.2	1515	4e-23	1187 - 1247	98	60 / 61	plus
JLOC1	JLOC1_49042.1	1459	4e-23	1131 - 1191	98	60 / 61	plus
Harvest21	ABC02813	1182	3e-25	1080 - 1139	100	60 / 60	plus	ABC02813
Harvest35	U35_2223	1182	3e-25	1080 - 1139	100	60 / 60	plus
Harvest35	U35_36217	444	6e-22	330 - 390	97	59 / 61	plus

Contig Sequence (1182 bp)

>U35_2223 1182 Hv_44K_v2
GTCCCCCGGGCTGCAGGATTCGGCACGGGGGCTCATCTCCTCTCAGTCCACACAAAAATC
GGATGGTGAAGCAGCAGTAGCAGCCGGAGAAGCAGTTCCAGTTCCCCTCCCCAGCAGCTA
AGCTTGCAGAGAGCACCAGCCAGCCGCGGCTTCTCCGTCATTAGCAAGAGGGCAGGAAGG
AAGATGGGCTCGTTGGAGGCGACGAGGGCGGAGCTGGGCCTGGCGGTGCTGTACCTGAAC
AAGGCGGAGGCTCGGGACAAGATCTGCAGGGCCATCCAGTACGGCTCCAAGTTCATCAGC
AACGGCCAGCCAGGCACCGCGCAGAACGTCGACAAGTCCACCACCTTGGCTCGCAAGGTC
TTCAGGCTCCTAAAGTGGGTGAACGATCTTCATGCTCTCATCAGCCCAGCCGCCAAAGGC
ACCCCTCTCACACTGGTCCTGCTTGGGAAGTCCAAGAATGCTCTGCTGTCGACCTTCTTG
TTCCTGGACCAGTTCGTGTGGCTAGGGAGATCGGGGATTTACCAGAACAAGGAGCGCACG
GACCGCATCGCCAGGATATCCCTCTACTGCTGGATGGCCTCCTCCGTCTGTGCAAGCCTA
GTTGAGCTTGGTGAGCTCAAGAGGCTATCCAAGGCGATGAGGAAGCGCGCCAAGGAGCTC
AGGGGCGCCGACAAATACGAGGACGAGCAGTACCTGGGGAAGATGAAGCAGTCGGACGAC
CGGCTGCTGGCGCTGGTGAAGGCGGGCATGGACGTGGTGGTGGCCGTGGGGCTGCTGCAG
CTGGCGCCCAAGAAGGTCACCCCAAGGGTCACCGGGGCCTTCGGATTCGTCACCTCCCTC
ATCTCCTGCTACCAGCAACTCCCGGCCCGTGCCCCTTTGGCCAAAGTCAAGGCGTGAGGA
ACGGACGCTGCACCACTCTGCCCTTCACTTCACGTGCATGGAATCTCAGATGTTATTATG
CGTAAAGCACGTAGCAGTATAGAATGATGATGATGTGGATCCTCTGTACGTACGGTTTTT
ATACATATATGTACACGGTATGTTATGGGAAGTAGTACTGTAATGGACATGGCCCATCAT
GTTTCGTGTTTCGGCTTAGGCCAACTCCAACGCATGACTCAAACGAACGTCTATTTTTTT
AAAATTTTATCCATTTGAGTAGGGCAAAAAAAAAAAAAAAAA

Homology of Contig U35_2223 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g02590.4	238	1e-144	protein\|peroxisomal biogenesis factor 11, putative, expressed
Brachypodium v1_2	Bradi1g77380.1	238	3e-151
Arabidopsis v10	AT1G01820.1	235	7e-119	\| Symbols: PEX11C \| peroxin 11c \| chr1:296213-297723 REVERSE LENGTH=235