barSeed - Barley Seed Development Database

Probe CUST_37181_PI390587928

Source Contig U35_2226

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_37181_PI390587928	Hv_44K_v2	GTTCTTGATTGTGGGCTGCCGCTTGAATTGTCACTTAGTGTTGAATTGTGGTTCAAAAAA	1019	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.629	1.556	1.289	0.706	0.238	0.205
Raw	2222.467	3319.309	2394.760	2024.882	242.936	229.706

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_7518.1	1281	9e-22	62 - 116	100	55 / 55	minus	ABC05792
JLOC1	JLOC1_4958.1	1204	5e-22	1097 - 1151	100	55 / 55	plus
Harvest21	ABC05792	1048	3e-25	983 - 1042	100	60 / 60	plus	ABC05792
Harvest35	U35_2226	1085	3e-25	1020 - 1079	100	60 / 60	plus

Contig Sequence (1085 bp)

>U35_2226 1085 Hv_44K_v2
GCCCATTTCTTATCTACTGCCCCCGCCGTCCTCCCATCCTCCCCCGATCCAAATCCGAAA
ATTCCCCCCTCCCCGCTGCCCGCGCCCGCACTCTAGCTCTAGAGCTCGGCTCCACCGCCG
TGGGCTCTAGCCGCCGTCGCTGCCATGGCGACCGAAGGGTCTCCCAAGTCCGGTGACATC
CCGCCCTACCCCGAGATGATTCTCGCGGCTATCGAGGCGCTGGGCGACACTAACGGCTCC
AATAAGTCGGCCATTTCCAGCTACATCGAGGAGAAGTACGAGGGCCTCCCTTCCGCGCAC
GCCTCCCTCCTCACGGCCAACCTAGCCAGCATGAAGGAGGCCGGCAAGCTCGCCTTCGTC
AAGAACAACTACCTCAAGGCCGACGCGGTCTCCGCCACCCCGGCCAAGCGCGGCCGCGGC
CGCCCGCCCAAGGACCCCAACGCGCCGCCCAAGCCCAAGCCGGATCCCAACACGCCCAAG
CGCGGCCGGGGGCGCCCGCCCAAGGACCCCATGTCCGTCGCCGTCAAGGAGGCCGTCGCC
AAGGCCACCACCGGCATGCCCAAGGGCCGCGGCCGCCCGCCGGGCCCCTCCGCGGCCAAG
AAGGCCAAGGTAACCAAGGAGGCTGAGTCTCCGGCGGCCGCGTCTGGCTCCGCTCCTGCC
AAGCGCGGCCGTGGGCGCCCACGCAAGGTGGCGGCTTGAGGCCTGCATGCTGTTGCCTTT
CGGTCCGTGTATCTCGCCGTGGTTCCGACGGTGGTAAGCTCCTAGGTGTGACGGTGCTTG
TTCGATTCGTGCTTCGTACTAATTGTTGTCTCGGCTTAGTTGCTCAGTATGCTGTAACCT
GATCCAGATGAGTGTGCACAATGGATGGATGTATGGATGTTTTTAGCTTCGGTCGTAATA
GTTGACTCTGCTGCTGAGAGTGAAGATGTTCATTTTTTTATCGCCATCTCTGTTGCTTCC
GCATTATGATGAAGATGTTTGTCCTGTTCTTGTGTACTAGGTCACTGTCCCCTTGACTTG
TTCTTGATTGTGGGCTGCCGCTTGAATTGTCACTTAGTGTTGAATTGTGGTTCAAAAAAA
AAAAA

Homology of Contig U35_2226 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None