barSeed - Barley Seed Development Database

Probe CUST_37179_PI390587928

Source Contig U35_2228

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_37179_PI390587928	Hv_44K_v2	CTGCTGGATTACAGACGTTTTTTCCATCTTTTATATATTCTTGGTCATAAGCTTGTTGAG	1336	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.882	2.740	1.351	0.717	0.294	0.301
Raw	120.933	176.856	77.983	64.965	9.474	10.570

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC05966	948	3e-25	20 - 79	100	60 / 60	minus	ABC05966
Harvest35	U35_2228	1415	3e-25	1337 - 1396	100	60 / 60	plus

Contig Sequence (1415 bp)

>U35_2228 1415 Hv_44K_v2
CCCGGGCTGCAGGGACACAACGAGTGCGAGCCTTTCCCCCCCATCCTCCCTCCCCCTCTA
CCACCGCGCGCCGCCGCTCCTCCCCCTTCGCCTCGCCGCCCTCACCGAGCACCATGGCGG
CGCCGGAGACCTCCGCCCGCGGCGCGGGCCCCGCGCTCCTCTTCCCGTCGTCCTCGTCCT
CCTCGTCGTCCGCGCGGGTGGAGGCCGTCGTCGTCTTCACCATCTGCGACAGCTTCGTGC
GCCGGCCCGACCAGGCGGAGCGCGTCATCGGCACCCTCCTCGGCTCCGTCCTCCCCGACG
GCACCGTCCACGTCCGCAACGCCTACGTCGTCCCCCACAGCGAGTCCGCCGACCAGGTTG
CTCTCGACATTGAGTACCACCACAACATGTACGCGTCGCACCAGAAGGTGAACCCCAAGG
AAGTGCTTGTGGGATGGTTCTCCACTGGCTTTGGTGTTTCAGGGGGTAGTACGCTTATCC
ATGAATTTTATTCAAGAGAAGTACAGAGCCCTATTCATCTTACTGTTGACACTGGCTTCA
CTATGGGGGAGGCTTCCATCAAAGCATATGTCTCATCCAACCTGTCTCTTGGAGATAGGC
ACCTTGCCGCACAATTTCAGGAAATTCCTCTGGACCTAAAGATGCTTGATGCAGAAAAAG
TTGGATTTGAAATGCTGAAATCTACAATGGTGGAGAAGCTCCCCAATGATCTGGAAGGAA
TGGAGTCTTCAATGCAAAAGTTATATGCTCTTATTGATGAGATCTACAAATATGTTGATG
ATGTTGTGGAAGCTCGTGTTGCACCGGACAACAAGATAGGCAGGTTCATTGCTGACACCG
TCTCCTCCATGCCAAAGCTGTCTCCAGCATCTTTTGACAGGCTCTTCAATGACAAGATTC
AGGACAATCTTGCGCTTGTATACCTGTCAAGCATTACACGGACTCAGATCGCGGTAGCCG
AGAAGCTCAACACCGCTGCCCAAGTCCTGTGATTTCCATGTATTGTTTGGGTAGCTGCCA
AATTCCATGCCGCCTGTGCTTGGTTTTCGTTTGATTGAATGAGAGTTCAGAATATGTTGT
CAGAATATGCATTTTTGTACCTGTTATCCAAGTTCTAAAGAAAAGAATTCTCCGCGACTA
AAAAAAAAAAAATGTTTGCACTAATGTGGGCCCAGACCTTTCCATTGGATTTAGTATAGC
ACTTTAGTACTTCGCTACTGGCTGAATATTTGTAATGCCTGATATGTAGTTGTCTGAGGA
GCAGTGGATGCTGGCTTCGTTTTTCTTGGTTTCCTTTGCACGTATAATGGGCCATATGAA
CAAATCAACATAGCCACTGCTGGATTACAGACGTTTTTTCCATCTTTTATATATTCTTGG
TCATAAGCTTGTTGAGTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_2228 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g01450.1	285	1e-156	protein\|eukaryotic translation initiation factor 3 subunit F, putative, expressed
Brachypodium v1_2	Bradi2g39810.1	291	2e-156
Arabidopsis v10	AT2G39990.1	293	2e-123	\| Symbols: EIF2, AteIF3f, eIF3F \| eukaryotic translation initiation factor 2 \| chr2:16698332-16699929 REVERSE LENGTH=293