- Probe CUST_37178_PI390587928
- Source Contig U35_2229
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_37178_PI390587928 | Hv_44K_v2 | ACTGTCAGGATTGAAGATATAGATAGCATGCAAGACGAGATGATGGATCTTATGGATGTG | 532 | GeneList: purple MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.355 | 0.629 | 1.112 | 1.552 | 0.925 | 1.429 |
| Raw | 105.669 | 303.385 | 451.295 | 1029.268 | 208.237 | 351.368 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK372130 | 1158 | 2e-24 | 548 - 607 | 100 | 60 / 60 | plus | ABC07551 ABC14049 |
| MLOC | MLOC_5296.5 | 2738 | 2e-24 | 2077 - 2136 | 100 | 60 / 60 | minus | ABC07551 ABC14049 |
| MLOC | MLOC_5296.6 | 570 | 2e-24 | 146 - 205 | 100 | 60 / 60 | minus | ABC07551 |
| MLOC | MLOC_5296.4 | 2121 | 2e-24 | 1465 - 1524 | 100 | 60 / 60 | minus | ABC07551 ABC14049 |
| MLOC | MLOC_5296.1 | 2351 | 2e-24 | 1662 - 1721 | 100 | 60 / 60 | minus | ABC07551 ABC14049 |
| JLOC1 | JLOC1_3400.2 | 892 | 8e-25 | 599 - 658 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_3400.1 | 2110 | 8e-25 | 616 - 675 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC07551 | 1161 | 3e-25 | 534 - 593 | 100 | 60 / 60 | plus | ABC07551 |
| Harvest21 | ABC07550 | 599 | 3e-25 | 533 - 592 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_2230 | 1161 | 3e-25 | 534 - 593 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_2229 | 592 | 3e-25 | 533 - 592 | 100 | 60 / 60 | plus |
Contig Sequence (592 bp)
>U35_2229 592 Hv_44K_v2 CCGCCTTTGCTCCCTCCCGATTTCATCCCCAATCCTGCACCAAATCCGCCCTCGCAAGCA ATCGAAGCAGCCTCGATTACCATCAACCTCGAGAGAGAGAGAGAGAGAGGCGATTCGATT CGATTCGATCTGATTCGACCTCGCGCGGCGCGGAGGAGGAGGAGGAGCGATGAAGAAGAT CTTTGGGGCCAAGAAGAGCCAGGACCCGCCGCCGTCCATCCAGGACGCCACCGACCGGAT ATACAAGCGGGGGGACACGGTGGACGAGAAGATCAAGAAGCTGGACGCGGAGCTGGCGCG CTACAAGGAGCAGATCAAGAAGACCAGGCCGGGCCCCGCGCAGGAGGCCGTCAAGGCCCG CGCCATGAGGATCCTCAAGCAGCGCAAGATGTATGAAGGACAGCGCGACATGCTGTACAA CCAAACTTATAATCTTGACCAAGTTGCTTTTGCGTCGGAGGGAATTAAAGATGCTCAACA GACTATGACTGCAATGAAGGCTGCCAATAAAGAGCTGAAAGGGATGATGAAGACTGTCAG GATTGAAGATATAGATAGCATGCAAGACGAGATGATGGATCTTATGGATGTG
Homology of Contig U35_2229 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os05g01250.1 | 233 | 1e-87 | protein|SNF7 domain containing protein, putative, expressed |
| Brachypodium v1_2 | Bradi2g39980.3 | 219 | 6e-93 | |
| Arabidopsis v10 | AT3G10640.1 | 235 | 1e-80 | | Symbols: VPS60.1 | SNF7 family protein | chr3:3323501-3324905 REVERSE LENGTH=235 |