barSeed - Barley Seed Development Database

Probe CUST_37177_PI390587928

Source Contig U35_2230

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_37177_PI390587928	Hv_44K_v2	TTGTTAGTATGTCTCTGCTGAGTTGAATTTTGAGGTGAATTGGTATCTGCTTTTCTGATA	1063	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK372130	1158	2e-24	1078 - 1137	100	60 / 60	plus	ABC07551 ABC14049
MLOC	MLOC_5296.5	2738	2e-24	1547 - 1606	100	60 / 60	minus	ABC07551 ABC14049
MLOC	MLOC_5296.4	2121	2e-24	935 - 994	100	60 / 60	minus	ABC07551 ABC14049
MLOC	MLOC_5296.1	2351	2e-24	1132 - 1191	100	60 / 60	minus	ABC07551 ABC14049
JLOC1	JLOC1_3400.1	2110	8e-25	1146 - 1205	100	60 / 60	plus
Harvest21	ABC07551	1161	3e-25	1064 - 1123	100	60 / 60	plus	ABC07551
Harvest35	U35_2230	1161	3e-25	1064 - 1123	100	60 / 60	plus

Contig Sequence (1161 bp)

>U35_2230 1161 Hv_44K_v2
CAAAGACTCCGCCTTTGCTCCCTCCCGATTTCATCCCCAATCCTGCAGCAAATCCGCCCT
CGCAAGCAATCCAGCCTCGATTACCATCAACCGAGAGAGAGAGATAGAGGCGATTCGATT
CCATCTGATTCGACCTCGCGCGGCGCAGAGGAGGAGGAGGAGGAGGAGCGATGAAGAAGA
TCTTTGGGGCCAAGAAGAGCCAGGACCCGCCGCCGTCCATCCAGGACGCCACCGACCGGA
TATACAAGCGGGGGGACACGGTGGACGAGAAGATCAAGAAGCTGGACGCGGAGCTGGCGC
GCTACAAGGAGCAGATCAAGAAGACCAGGCCGGGCCCCGCGCAGGAGGCCGTCAAGGCCC
GCGCCATGAGGATCCTCAAGCAGCGCAAGATGTATGAAGGACAGCGCGACATGCTGTACA
ACCAAACTTATAATCTTGACCAAGTTGCTTTTGCGTCGGAGGGAATTAAAGATGCTCAAC
AGACTATGACTGCAATGAAGGCTGCCAATAAAGAGCTGAAAGGGATGATGAAGACTGTCA
GGATTGAAGATATAGATAGCATGCAAGACGAGATGATGGATCTTATGGATGTGAGCAATG
AAATACAAGAAACTCTTGGTAGAAGCTACAATGTCCCAGATGACATCGACGAGGAGGAAC
TTATGGGCGAGCTTGATGCTTTGGAAGCCGATATGGACTTTGAATCGAATTCAGTCCCAT
CGTACCTCCAACCAGACAAGGAGACTGATCTTGATTCTGAGCTTAACTTACCTGCTGCAC
CAAGTGGTCATGCAGCAGTCCCGGCGAACCGGCAGCAGGAGGATGAAATGGGACTGCCTA
CTGTGCCGCACGCGTCAATTCGTACCTGAAATTAACAAAAAAGCTATGGTGTAGGTTTGA
TCTCGTTGTAAATGGTCCGCACTTTGTTTATGCATGGACAAATTCATTGTATCTTGCCTC
ATATACCACTGCAATTCGTTGAACGATGGAATGTCTCCTCCGCATTGTGTTGGAGTAATA
GTGAGTGATAAAGGGAGTGTTCTCTGTATGGTTGTACATCCTGTTGTTAGTATGTCTCTG
CTGAGTTGAATTTTGAGGTGAATTGGTATCTGCTTTTCTGATAATTAAATTATGGGACGT
TGCTAAAAAAAAAAAAAAAAA

Homology of Contig U35_2230 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g01250.1	233	9e-150	protein\|SNF7 domain containing protein, putative, expressed
Brachypodium v1_2	Bradi2g39980.1	233	3e-157
Arabidopsis v10	AT3G10640.1	235	4e-126	\| Symbols: VPS60.1 \| SNF7 family protein \| chr3:3323501-3324905 REVERSE LENGTH=235