barSeed - Barley Seed Development Database

Probe CUST_37175_PI390587928

Source Contig U35_2232

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_37175_PI390587928	Hv_44K_v2	GTAGCAGAGCATGTTGGATAGTGTGATAATAGGTTTAAATAGAATATGGGACATACTCAT	1727	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_36702.1	3315	2e-24	19 - 78	100	60 / 60	minus	ABC05877 ABC06742
JLOC1	JLOC1_23673.3	3306	8e-25	3234 - 3293	100	60 / 60	plus
JLOC1	JLOC1_23673.2	3442	8e-25	3370 - 3429	100	60 / 60	plus
JLOC1	JLOC1_23673.1	3222	8e-25	3150 - 3209	100	60 / 60	plus
Harvest21	ABC05877	1805	3e-25	1728 - 1787	100	60 / 60	plus	ABC05877
Harvest21	ABC06742	788	5e-23	17 - 76	98	59 / 60	minus	ABC06742
Harvest35	U35_2232	1805	3e-25	1728 - 1787	100	60 / 60	plus

Contig Sequence (1805 bp)

>U35_2232 1805 Hv_44K_v2
GGAGAGGATGGTAAGGCAAACGAGAATGAAGAAAAGCTAGAAAAAGAAAGTGCGAAGAAG
GAAGGAAAAGATGGCAAGGTAACAGAAGAGGAGGTCGGCGAGGCAGACAAGAATGTGGAA
GAAAATAAGGAGGAAACACCTAAGAACAAGAGGGCAAGGAGTGCTAGGGATAGACGCCAG
GGACAGGACAAGAAACAGCATGGGTCCAAATCCAGGGAAGCCAAAAGTTTACTAAACACT
CCCAGCCCTTATGGTATTGATCGCCCTCAACGTGAGAGGAAAATAGTAGAGAGGTTGGTT
GAAGTGATTGATAAGGAGCCAAACAGGAACTTCGTAGTTGAGAAGGGTCGTGGTACTCCT
TTAAAGGATATACCAAGTGTGGCACAGAGGTTAACGAGGAAGAAACCTGCTGATCTTAAA
TTTCTTCACAATGTTCTTTTTGGGAGGAAGGGCAAGACTGTCGATTTTAAAGGCCATATA
CTTCAGTTCTCTGGATTTGTGTGGCATGAGAGCGATGAAAAGCAGAGAGCCAAGGCAAAG
GAGAAGCTTGACAAGTGTATGAAAGACATGCTGGTGGATCTCTGTTGGCTTCTTGCTATT
CCGGTTCCCAAAACAAACATCAGAAAGGAAGATATTGTGGCAAAGCTGTTGGACTTCATT
GCCGAACCTCATGTTATGCCTGATTCTGGCCTTTCTGATGACCAGGGGTCAAATTATAGG
AAACGCAAGAGAGGAGGTGGTAGTTCAAGCAAGACTTCGGATATCACTCCCAAGAGGTCT
AAGAAGAAATTTGCTGACCACATATCTCCAAGGCAAAAGCAAGCTCTGGAGTATGATACG
GATGAAGATGTGAAGTCTGGCAGCGAGGAAGATGCAGATGAATCTCCTGATGAGCAGGAA
GATGGCTATGACTCTGCCGAAGAAAAGGCAAGTAGGAAGTCCTCGGAAGTAAAAGATTCT
GCAGGTAAAAAGAAGGCTGCTGCTGGGAGCACCCATAGGACAAGTCCGCCAAGGACAGCA
AGCAAGACTGCAGGCAAAACATCACCATCCAAAGGTTCCAAGGAAAAGGAGAGCCTTGAT
GAGAGTGCAAAGGTCTTCTCTAGGAAGAAGAAACCCATTATATCAAAGCGTACTCCAAGC
TCTGAAAAGGTGATAGAAGAAAATAAGTCATCAGGTAAAGAGGCAATGAAGAGCAAAGGC
GAATCAGCAGAAGGGGGTCTACCCAGTAAGGCTGAGTTGAAAAAGACCATTATCGGAATC
CTTAAAAAAGTTGACTTCAACACGTCTACTTTTAGCGACATTCTTAAGAAGCTCGATGAC
CATTACAAGATTGATCTGACCTCAAAAAAAGGAGCTATCAAAATTATGATTCAAGAAGAG
CTGACAAAGTTATCGGAGCAGGAGGATGATGATCAAGATAAAAGTGTAGATGCCAAGAAG
AAACAGTCACGGCATAGAGCAAAGGTCACTGGTTGAAGCGTTGTGAAACACCATAGCATT
AGCGCCCAGTGTTGATTATTTTGTACTTAATACCTACTTTACTTTTGCCTTGATGGGTTC
TTGGGCAGTCCTGTGTTAATTATTGTTTCTATGTTTGCAAACACCAAAATCCTAGCCCTG
TTTGTGTATGCGAAAACATAACCTGTAGTTAGCTCCATACTGGGAGGCACTTCAAGCTAA
CATTTGTCTGTAGATTTGCATATGCTTTCCAAAACTCTCAAATGGTTGTAGCAGAGCATG
TTGGATAGTGTGATAATAGGTTTAAATAGAATATGGGACATACTCATTAAAAAAAAAAAA
AAAAA

Homology of Contig U35_2232 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g40010.1	704	0.0	protein\|DEK C terminal domain containing protein, expressed
Brachypodium v1_2	Bradi1g15140.4	563	0.0
Arabidopsis v10	AT5G55660.1	778	4e-74	DEK domain-containing chromatin associated protein \| chr5:22539375-22543142 FORWARD LENGTH=778