barSeed - Barley Seed Development Database

Probe CUST_37171_PI390587928

Source Contig U35_2236

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_37171_PI390587928	Hv_44K_v2	CGTAAATTGTGTTTTGTTTGTGTTTACTTATTAATTGTTGGCGGACTGTTTGTTCCACGT	1004	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	3.689	4.600	1.304	0.710	0.276	0.289
Raw	753.582	1530.682	369.734	332.075	43.367	50.299

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_59040.1	2335	2e-24	1160 - 1219	100	60 / 60	plus	ABC06587 ABC35113
JLOC1	JLOC1_38393.1	1958	8e-25	1072 - 1131	100	60 / 60	plus
Harvest21	ABC06588	420	3e-25	297 - 356	100	60 / 60	plus
Harvest21	ABC06587	1085	3e-25	989 - 1048	100	60 / 60	plus	ABC06587
Harvest35	U35_2236	1130	3e-25	1005 - 1064	100	60 / 60	plus

Contig Sequence (1130 bp)

>U35_2236 1130 Hv_44K_v2
ACCTCACTTTCAACCAGACACCACCCCTCTTCTTGCTCTGCTCTCCTCTCCTCTCCTCTC
CCACACGCGTCCTAAAGCAAAGCAAGCTCGGCGAAAAGCAGCTCGGACGCCATGGGCAAG
GACTGCGGCAACCACGGCGAGGACGACGTCCGGCGGGCGTGCCGGCGCCTCCTGGCCATC
CTCTTCTTCCTGGCCCTGGTGGTCGCCGTCATCGCCCTCATCGTCTACCTGGTCCTCCGC
CCCACGCACCCGCGCTTCTACCTCCAGGACGCCTCGCTCCGGCAGCTGGACGTGCTCACC
GCCAACGCCTCCGCCGCCGCCGGCGTGCTCTCCACCGTGCTCCAGGTCACCGTCGCCTCC
CGCAACCCCAACGACCGCGTCGGCGTCTACTACGACCGCCTCGACGTCTACGCCTCCTAC
AAGTACCAGCAGATCACGCTGGCCTCCGCGCTCCCGCCGGTCTACCAGGGCCACGGCGAC
GTGGAGGTCTGGTCCCCGGTGCTCTCCGGCCCCAGCGTCCCCTTCGCGCCCTACCTCGCC
GATGCGCTCGCCAAGGACGTCCAGGCCGGGTACCTCATCCTCCAGGTCAAGATCGACGGC
CGCGTCCGGTGGAAGGTGGGCAGCTGGATCTCCGGCCACTACCACATCTTCGTGACCTGC
CCCGCCTTCCTCGTCGGCGTCGGCGGCAACGGCGCGCCGGGGGCCAGCGGGCTCAGGTTC
CAGACCGCCACCTACTGCCACGTCGAGGTCTAGCCGTACGTCCGTCCGTGCTCTGCTTCT
TCTTCTTCTTTTTCCTCTGCTCCGTCGTCGGCGGCGAGGTAGGTTTCTTGCGGGTGGCGC
GCGCGCGTGTGCGTAGCGAAGAGCATCATCAAGGCTCAAGGCCAAGGGGTGGGGGTGGTA
CATGGACATGGTGGTAATAAGTGTTAGCGTCGAGGGGTATAGGTGTAAAAAAAGAGAAGG
AAAAATTTAGGGTGGGTTAAGTTAAATTGATGCTGCGATTTACACGTAAATTGTGTTTTG
TTTGTGTTTACTTATTAATTGTTGGCGGACTGTTTGTTCCACGTTTAATTGTCAAATATA
TATATAAATATAAACTTGTTGTGATTGATGGAACTAAAAAAAAAAAAAAA

Homology of Contig U35_2236 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os12g06260.1	213	2e-98	protein\|harpin-induced protein 1 domain containing protein, expressed
Brachypodium v1_2	Bradi4g25120.1	290	2e-97
Arabidopsis v10	None