barSeed - Barley Seed Development Database

Probe CUST_37169_PI390587928

Source Contig U35_2238

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_37169_PI390587928	Hv_44K_v2	CTGCTTGCTATTCGTTGACACCAGATTTTGGCTTACACAAGACGTCTTTATAACAAAAAA	1826	GeneList: darkslateblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.727	1.825	1.193	0.754	0.326	0.362
Raw	534.119	875.085	507.977	510.010	76.174	91.703

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_41288.2	2089	5e-22	2029 - 2083	100	55 / 55	plus
Harvest21	ABC05344	1897	3e-25	1827 - 1886	100	60 / 60	plus	ABC05344
Harvest35	U35_2238	1897	3e-25	1827 - 1886	100	60 / 60	plus

Contig Sequence (1897 bp)

>U35_2238 1897 Hv_44K_v2
AATTCGGTACGAGGCTCCCCTCTCCAGCTCCAAGCTCCAGCTCTGCTTTCTTCGCCTCGC
CCCAGTGAGCGAGTAACCTCAATCGATTCGATTCGATTCAACCAAAGCAAACGAGTATCG
GAAAAGGATTAAATTGCTGCAAGGACGAGGCAAGGATGGCGAGGGCGGCGCCCATCCTCG
CCGTGTCCAAGCCGTCTCCTCTCCCTCTAATCGCTCCGTCGTCACGCCAACGGGCTGGCT
CCCTTCGCCTGCATCGCCGCCACCTCCTCCTCCCATTCTCGCCGTCGTCGTCATGCAGCA
CCAGCACCAGTGCCTCTTCCTCCTCCTCCTCGTCGCCGGTCTTGCTGCGGGACGACGAGC
TGGACCACCAGGAGGAGCCCCCGCCCGCTTCGGAAGCCGACTCGCGGCCCCGCCGCATCG
CGCTCTTCGTTGAGCCCTCCCCCTTCGCCTACGTCTCCGGCTACAAGAACCGCTTCCAGA
ACTTCATCAAGTACCTCCGCGAGATGGGCGACGAGGTCATCGTCATCACCACCCACGAGG
GCGTCCCCGACGAGTTCCACGGCGCCAAGCTCATCGGATCCTGGAGCTTCCCTTGCCCCT
GGTATCAGAAGGTCCCGCTCTCGCTTGCCCTCAGCCCCAGAATCATTGGAGAAGTCGCTA
GGTTCAAGCCCGACATTATCCACGCCTCTTCCCCTGGAATCATGGTATTCGGCGCCCTAA
TCATCGCAAAATTGCTATGCGTCCCTCTAGTAATGTCCTACCACACCCATGTTCCAATTT
ATATTCCCAGGTATACATTCAGCTGGCTTGTCAAGCCCATGTGGCTAGTTATAAAATTCT
TGCACCGAGCTGCGGATCTCACACTGGTACCATCAGCCGCTATTGGCAGGGACCTTAAAG
CAGCCCGTGTTACAGCAGCCAATAAGATACGCCTTTGGAACAAGGGCGTGGATTCAGAAA
GCTTCCATCCTCGTTTCCGTAATCAGGAAATGCGGTCAATGCTAACGAACGGTGAACCAG
AGAAGCCACTGATAATCTATGTTGGACGCTTAGGAGTTGAGAAAAGCTTGGATTTTCATA
AGAGAGTCATGGACCGACTTCCAGGAGCAAGAATTGCATTCATTGGAGATGGCCCATTCA
GGCCTGAACTTGAAGAGATGTTTTCAGGAATGCCTGCAGTGTTCACAGGGACATTGCAAG
GGGAAGAACTGTCACAGGCCTATGCCAGTGGGGATGTGTTTGTGATGCCTTCTGAATCAG
AGACGCTGGGTTTTGTTGTGTTGGAGGCAATGTCATCGGGAGTTCCGGTGGTCGCTGCTC
GAGCTGGAGGCATACCTGACATTATTCCTGAGGACCAGGAAGGAAAGACCAGCTTTCTGT
ACACACCGGGTGATGTCGATGACTGTGTTGGGAAGGTTGAACGCCTGCTCTCCTGTGAAG
AGTTGAGAGAGACAATGGGGAAGGCCGCCAGGAAGGAGATGGAGAAATTTGGCTGGAAGG
CGGCGACGAGGAAAATTCGGAACGAGCAGTACAGCGCCGCGATTTGGTTCTGGCGCAAGA
AGAGATCGCAGCTGCTGAGACCACTCCAGTGGGTGTTCCGGAGGCTCTTCAGGTCTGCTC
CTGTTCCCGCCGCCGCCATAACAAATCAGTCATAGGAGATTCGTTGTATTCAAGTCATAG
AATCAATCAACCATTCTGTTGAGCCCATCAGTCTTGGAAGATAGAAAGAATCCTGGGACA
CCTAACGTGAATATGTAATGCTTAATTAAATTGGAGCCAACAGAAGTAACTCCAGTTTGC
TCTGGAGGTAGGCTGTAAATGTTATACTGCTTGCTATTCGTTGACACCAGATTTTGGCTT
ACACAAGACGTCTTTATAACAAAAAAAAAAAAAAAAA

Homology of Contig U35_2238 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os07g01030.1	480	protein\|glycosyl transferase, group 1 domain containing protein, expressed
Brachypodium v1_2	Bradi1g59860.1	483
Arabidopsis v10	AT5G01220.1	510	\| Symbols: SQD2 \| sulfoquinovosyldiacylglycerol 2 \| chr5:86907-89885 REVERSE LENGTH=510