barSeed - Barley Seed Development Database

Probe CUST_37166_PI390587928

Source Contig U35_2241

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_37166_PI390587928	Hv_44K_v2	TTTCCGTGGGATGTATCAACTGCTACACATGATAATGAAAGGTGGCGCCAAATTCAAGTG	1245	GeneList: darkolivegreen MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.012	0.065	0.653	1.643	1.386	2.145
Raw	130.382	1202.937	10691.440	40556.567	12228.210	20623.200

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK367197	1413	2e-24	1215 - 1274	100	60 / 60	plus	ABC05678
MLOC	AK250751.1	1306	2e-24	1247 - 1306	100	60 / 60	plus	ABC05678
MLOC	MLOC_1426.1	3123	2e-24	1033 - 1092	100	60 / 60	plus	ABC05678
JLOC1	JLOC1_879.1	1360	8e-25	1031 - 1090	100	60 / 60	plus
Harvest21	ABC05678	1310	3e-25	1234 - 1293	100	60 / 60	plus	ABC05678
Harvest35	U35_2241	1325	3e-25	1246 - 1305	100	60 / 60	plus

Contig Sequence (1325 bp)

>U35_2241 1325 Hv_44K_v2
AGCTAGTGTAGCCGGCGAGGTCCTCTCCCCTCAGTCTTCTTCCTCCTCTGCCTTGTTGCT
ACCAGTTGGATCCATGGAGCAGAGCCAGATGGCCAGAGTGAAGCTTGGCACGCAGGGCCT
CGAGGTGTCCAGGATCGGGTTCGGATGCATGGGTCTCACCGGCGTGTACAACGATCCGGT
GCCGGAGGATGCTGGCGTCGCCATCATACGGCGCGCCTTCGACGCCGGCGTCACCTTCTT
CGACACCGCCGATGCTTATGGGCCACACACCAACGAGGTCCTACTTGGAAAGGCACTAAG
GCAATTGCCTCGTGAAAGGGTTCAGGTGGCCACCAAGTGTGGCATTGCAGGGTTCGATGC
CGGTGGCCTGTGTGTGAAGGGCACTCCAGAGTATGTGCGTGCGTGCTGCGAAGCAAGCCT
CGAGCGCCTGGCTGTCGACTACATTGACCTATATTTCCTGCATCGCATTGACCAGTCGGT
GCCTATAGAAGAAACTATGGGGGAACTGAAGAAGCTGGTTGAAGAAGGGAAAGTCAAGTA
TGTTGGCTTGTCTGAGGCTAGTGCCGATACCATTAGACGGGCACATGCAGTTCATCCGAT
CACCGCAGTGCAGATGGAGTGGTCACTATGGACCAGGGATATAGAGGAAGATATTACCCC
ACTATGCAGGGAGCTTGGTATCGGAGTTGTTCCATACAGCCCACTTGCTCGTGGTTTCTT
TGCTGGCAGGGCAGCCGTAGAGAGCATACCATCAGGGAGTTTACTGTCCAAACATCCTCG
GTATACCGGAGAAAACCTGGAGAAGAATAAAGTCCTGTATACACGACTTGAAATGTTGTC
CACCAAGTATGGCTGCACACCTGCTCAACTTGCTCTTGCCTGGGTTCTTCATCAAGGGGA
CGATGTCGTTCCAATCCCTGGGACAACAAAAGTGAAGAACCTTGATGATAACATCGAGGC
TGTAAAGGTAAAGCTGAGCAAGGAAGACCTGGAAGAAATCTCAGCTGCTGTCCCCGCCGG
CGACGTGGCTGGGTCCAGGGTCATTGGAATCCTGGAGCCTTATTCTTGGAGGGTTGCAAA
CACTCCACCTCAAATGTAGCCATGTTACCGCCTTATGCTGAATTTGTTTCCACCTTGCTG
GATACAAAAAATAAGTACATTCAAGGGGGGAAATGTGAATGAATCAAGCTCATCCATACT
CAACAATAGGGAAACATTGTTCCTGAAACAGCAGATGCCATTGATTTTCCGTGGGATGTA
TCAACTGCTACACATGATAATGAAAGGTGGCGCCAAATTCAAGTGAAAAAAAAAAAAAAA
AAAAA

Homology of Contig U35_2241 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os10g28320.1	344	0.0	protein\|oxidoreductase, aldo/keto reductase family protein, putative, expressed
Brachypodium v1_2	Bradi3g26900.1	342	0.0
Arabidopsis v10	AT1G60690.1	345	4e-121	NAD(P)-linked oxidoreductase superfamily protein \| chr1:22349892-22351668 REVERSE LENGTH=345