barSeed - Barley Seed Development Database

Probe CUST_37163_PI390587928

Source Contig U35_2244

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_37163_PI390587928	Hv_44K_v2	GCTGTCATTGATCAAAATGGATGCAATGGAAATGCAGATATAAACTTTCAATTCACTGGA	385	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK369526	4491	2e-24	370 - 429	100	60 / 60	plus	ABC01861 ABC01864 ABC04659
MLOC	MLOC_58055.1	2651	2e-24	230 - 289	100	60 / 60	plus	ABC04659
MLOC	MLOC_58055.2	2570	2e-24	153 - 212	100	60 / 60	plus	ABC04659
JLOC1	JLOC1_37691.1	2620	8e-25	153 - 212	100	60 / 60	plus
Harvest21	ABC27723	661	3e-25	372 - 431	100	60 / 60	plus
Harvest21	ABC19101	658	3e-25	347 - 406	100	60 / 60	plus
Harvest35	U35_2246	850	3e-25	364 - 423	100	60 / 60	plus
Harvest35	U35_2244	461	3e-25	386 - 445	100	60 / 60	plus

Contig Sequence (461 bp)

>U35_2244 461 Hv_44K_v2
ATCTCAAACTCGTCATCTCCCTGTCATGCTCTGCTCTTACTAGATCCGATCTATGGACCC
CGTCCTCCCCGTCCTCCTCCTCCTTTCCCTCGCCGCTTTCTCCGCTGCCTCCGACGAGAT
CGACGGATGCGGCGGCTTCGTCGAAGCGAGCTCGGGCCTGGCCAAATCGAGGAGGGCGTC
AGAGTCCAAGTTCGACTACTCTGACATAACGGTTGAGCTGTGTACTGTCGACGGTTTGGT
GAAAGAAAGCACCCAATGTGCTCCTAATGGCTACTATTTCATTCCAGTCTATGACAAGGT
ATACTTGTGGATGATCTTCAGTGGTTCATTTGTCGTCAGAGTTAAGGGGCCTAAGGGATG
GTCATGGAAGCCTGAAACTGTTCCTGCTGTCATTGATCAAAATGGATGCAATGGAAATGC
AGATATAAACTTTCAATTCACTGGATTTACAGTATCTGGTA

Homology of Contig U35_2244 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g19470.1	1194	5e-62	protein\|nodal modulator 1 precursor, putative, expressed
Brachypodium v1_2	Bradi2g11490.1	1204	8e-64
Arabidopsis v10	None