barSeed - Barley Seed Development Database

Probe CUST_37162_PI390587928

Source Contig U35_2245

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_37162_PI390587928	Hv_44K_v2	CAGATAATCTCGGGTATTACAGACTTGATCAGGTTACATCCAAAGAATATGATATAGTTG	545	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_58055.1	2651	3e-21	972 - 1031	97	58 / 60	plus	ABC04659
MLOC	MLOC_58055.2	2570	3e-21	895 - 954	97	58 / 60	plus	ABC04659
JLOC1	JLOC1_37691.1	2620	2e-21	895 - 954	97	58 / 60	plus
Harvest35	U35_2245	608	3e-25	546 - 605	100	60 / 60	plus

Contig Sequence (608 bp)

>U35_2245 608 Hv_44K_v2
TCGAGCACTGTTGGCCTACTGAATTCCTGGACTCTACAAGTTGCGTGCATCTCATCCTGA
TTATGAAATTCAGATGACAGGTTCATCAGAGGTGGACTTGCGTTTTGGAAATGCTGTAGT
AAATGATGTTTTCTTCGTATCTGGATACAATATTCATGGCTCTGTAGTTGCGCAGGGAAA
TCCAATCTTGGGAGTTCACCTGTATTTATATTCAAATGATGTAAAGGAGGTTCCTTGCTC
GCAAGGTTTGATCGATGCACCCAGGGAAGGTGCTCTTTGCCATGCAGTATCTGGTGCGGA
TGGGAAGTTCTCATTTAGATCAATGCCCTGTGGTAGCTATGATCTGTTGCCATACTACAG
AGGGGAAAACACTGTTTTTGATGTTTCACCTTCTTCATTACATGTTTCTGTTGAGCACAG
TCACATGACAATCCCCCAAAAATTCCAGGTTACTGGGTTTTCTGTTGGTGGTCATGTTGT
TGATGGCTATGATGCTGGCATTGAAGGTGCCAAGGTTATAATTGATGGTCAGTTGAGAGC
TGTAACAGATAATCTCGGGTATTACAGACTTGATCAGGTTACATCCAAAGAATATGATAT
AGTTGCTG

Homology of Contig U35_2245 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g19470.1	1194	6e-111	protein\|nodal modulator 1 precursor, putative, expressed
Brachypodium v1_2	Bradi2g11490.1	1204	6e-115
Arabidopsis v10	AT3G62360.1	1227	8e-79	Carbohydrate-binding-like fold \| chr3:23073020-23080455 REVERSE LENGTH=1227