barSeed - Barley Seed Development Database

Probe CUST_37156_PI390587928

Source Contig U35_2251

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_37156_PI390587928	Hv_44K_v2	ATAGCGATCCATGTACCTACCCACGGCATATGCAATATATTATTTTCGCTGTTCAAAAAA	464	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.365	1.283	1.095	0.841	0.391	0.340
Raw	3297.810	4706.417	3635.047	4195.067	717.171	676.328

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC05985	2063	3e-25	1993 - 2052	100	60 / 60	plus	ABC05985
Harvest35	U35_2251	535	3e-25	465 - 524	100	60 / 60	plus

Contig Sequence (535 bp)

>U35_2251 535 Hv_44K_v2
GGACGAGCTCAAGAGCTTGATTGACATGTGCGTCCAGCGGGGGCTCACCAACAAGTCCAT
CGACCCGTTTGAGGACCCCTCGCAGTTCTGCGCCGTCACCCTCAGCCGCCTCTCCACCAT
CGGCCATGACGTTTGCGACCTCTGCGGCGCCAAGTTCTCCGCCCTATCTGCACCAGGCTG
CGTCATCTGCGGCATGGGCAGCATCAAGCGGTCCGACGCCCTCGCCGGCGCTGGCCCTGT
CGCCTCGCCCTTTGGCTAAGTTTTGCGTGTGACGGGTTCTGTTCTGTTTACCTGAGCCTC
TGTTTCTTGTATGTATTAGTGTGCAGTTAACATTCTTTGTTTTGTCCCGGGTTGTTGTAG
CAGTTCTGGTAATAGTTGGCCCTTGGAGATAACATTTTGTTGTGATTAATTTCTATATAT
GCTTCTACAGAACATACATAGATAGGGCTCGTTTGTCCTAGCAGATAGCGATCCATGTAC
CTACCCACGGCATATGCAATATATTATTTTCGCTGTTCAAAAAAAAAAAAAAAAA

Homology of Contig U35_2251 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None