barSeed - Barley Seed Development Database

Probe CUST_37155_PI390587928

Source Contig U35_2252

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_37155_PI390587928	Hv_44K_v2	ATGCACTAAATTGTTTGGATGAAGCATTCTTGGCCCTTGCCAAGGACCAATCACGTGAAG	1188	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK371801	5310	2e-24	4443 - 4502	100	60 / 60	plus	ABC05985 ABC31802
MLOC	MLOC_43633.2	5269	2e-24	4320 - 4379	100	60 / 60	plus	ABC05985 ABC31802
MLOC	MLOC_43633.1	5108	2e-24	4231 - 4290	100	60 / 60	plus	ABC05985 ABC31802
JLOC1	JLOC1_28210.1	5179	8e-25	4230 - 4289	100	60 / 60	plus
Harvest21	ABC05985	2063	3e-25	1189 - 1248	100	60 / 60	plus	ABC05985
Harvest35	U35_2252	2069	3e-25	1189 - 1248	100	60 / 60	plus

Contig Sequence (2069 bp)

>U35_2252 2069 Hv_44K_v2
ATTCCTCAAGGGAGCTTGCAGGAGAGGTCATGCCCTACATGAGAACAACTGATGCTGCTA
TCCCATCCGTTATTGCAGATCATATCGGTGTTTACTTGGGTGTGATGAAGGGCCGGGGTA
ATGTAGTGGAAGTAAGCGAAAAGAGCTTGGTTAAAGCTATGGCAGCAGCCAGCAGTGAGA
ATGCGCAACCGACATCTTCTGAATTGGCACTGAAAAACAAAGCAAATGCTGCTGGTGATT
CAGTTGGTGATAGTCTGGCCAGGCAGCTAGGGGTTCAAATTGCTTCTGCAGATGAACAGG
CAAAAGCAGCAGAGGAGTTTAAAAAGACTCTGTATGGTGTTGTTGATGCTGGAAGCAGTG
ACGAGGATGAGTCAACGTCAAAGACCAAAAGGATACAAATCAGGATACGTGATAAGCCAG
CTGCACCTGCTGTTGATGTTAACAAACTGAAAGAAGCCACTAAACAGCTAGGTTTGATGG
CTCCTCCGATCAGTAGGACAAGGTCATTGTCAGGAACACCACAAGAATTGGCTCAACCAG
CAGGCCCAGCACCATCTGCTGCTCCAGCAATGCCGAGTGGCGCAGTTGATTTCTTTGGAA
ATACTTTGGTGGCACCACCACAAGCGCCGGCAGGCGGCACGGGTCCTGTAATCGGAGGCC
TGGGAGTGACAGCTGGACCTATTCCCGAGGACTTCTTCCAGAACACCGTTCCATCACAGC
AACTTGCGAATCGACTGCCTCCTCCAGGAGCAATTCTGCAAAGAATGGCCAATCCTGACT
CTGGGATGAACGTTGGCAGACCGGTACCTAACCAAAACATGACGGGCAATGTTGGTCTTC
CAGATGGTGGGGTGCCGCCACAGGGGCCACAGCAAGGCCAGTTCGCTCAGCAACAAGGCC
AGTTCTCTCAGCAGCAAGGCATTCCTATGAACCCAATTGGCCTACCTGACGGTGGTGTAC
CCCCACAGAGCCAGGCTCTTCCTTCACAGCCACAGGGCTTCCAACCTGCTGTTCCTACTC
CGTCGCAACCAATTGATCTCAGTGCTCTCGAGGGTCCAGGAGCAGCAAAGCAAGTTGCTC
AGCCCCCAGCGCCTAAAGCCGTGCGTCCTGGCCAGGTACCCCGTGGCGCTCCTGCTGCAG
AATGCTACAGGATGGGTCTTGCTCATCTTGAGCAGAATCAGCTCACGGATGCACTAAATT
GTTTGGATGAAGCATTCTTGGCCCTTGCCAAGGACCAATCACGTGAAGCCGACATCAAAG
CACAGGCTACCATTTGTGCGCAGTACAAGATCGCCGTTTCATTGCTACAGGAAATCGCTC
GGCTGCAAAGAGTCCAGGGAGCTGGCACGCTGAGCGCCAAGGAGGAGATGGGCAGGCTGT
CTCGGCACCTGGCATCCCTGCCCATCCAGGCCAAGCACCGGATCAACTGCATCCGGACCG
CCATCAAGCGCAACATGGAGGTCCAGAACTTCGCCTACGCCAAGCAGATGCTGGACCTGC
TCTACTCCAAGGCGCCGCCGACCAAGCAGGACGAGCTCAAGAGCTTGATTGACATGTGCG
TCCAGCGGGGGCTCACCAACAAGTCCATCGACCCGTTTGAGGACCCCTCGCAGTTCTGCG
CCGTCACCCTCAGCCGCCTCTCCACCATCGGCCATGACGTTTGCGACCTCTGCGGCGCCA
AGTTCTCCGCCCTATCTGCACCAGGCTGCGTCATCTGCGGCATGGGCAGCATCAAGCGGT
CCGACGCCCTCGCCGGCGCTGGCCCCGTCGCCTCGCCCTTTGGCTAAGTTTTGCGTGTGA
CGGGTTCTGTTCTGTTTACCTGAGCCTCTGTTTCTTGTATGTATTAGTGTGCAGTTAACA
TTCTTTGTTTTGTGCCGGGTTGTTGTAGCAGTTCTGGTAATAGTTGGCCCTTGGAGATAA
CATTTTGTTGTGATTAATTTCTATATATGCTTCTACAGAACATACATAGATAGGGCTTGT
TTGTCCTAGCAGATAGCGATCCATGTACCTACCCACGGCATATGCAATATATTTTCGCTG
TTCTTTTGTCAAAAAAAAAAAAAAAAAAA

Homology of Contig U35_2252 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	Bradi1g51890.1	1625	0.0
Arabidopsis v10	AT3G50590.1	1614	6e-173	Transducin/WD40 repeat-like superfamily protein \| chr3:18771292-18779220 FORWARD LENGTH=1614