barSeed - Barley Seed Development Database

Probe CUST_37149_PI390587928

Source Contig U35_2258

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_37149_PI390587928	Hv_44K_v2	CGTCGAATCAATCTGGAAAGCTATGGGGGCATATAAAAGCAAAAATAAAAAATTCACATG	1017	GeneList: lightgreen MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.012	0.028	0.330	2.582	4.355	8.411
Raw	3.808	19.474	218.998	2772.389	1496.490	3168.603

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_58404.1	1344	2e-24	1063 - 1122	100	60 / 60	plus	ABC05322
JLOC1	JLOC1_37941.1	774	8e-25	25 - 84	100	60 / 60	minus
JLOC1	JLOC1_37940.2	469	8e-25	386 - 445	100	60 / 60	plus
JLOC1	JLOC1_37940.1	1172	8e-25	1046 - 1105	100	60 / 60	plus
Harvest21	ABC05323	475	3e-25	385 - 444	100	60 / 60	plus
Harvest21	ABC05322	782	4e-24	703 - 760	100	58 / 58	plus	ABC05322
Harvest35	U35_2258	1107	3e-25	1018 - 1077	100	60 / 60	plus

Contig Sequence (1107 bp)

>U35_2258 1107 Hv_44K_v2
CTGTTTCAAGCTAGCTAGGGCAGCAGCCATGGGTGTCAGGGGTGGTGGTGTCGTGTGGTG
TCTCCTGCTCGCCGGGCTCCTTCTCCTGGCCGTGGCCTCCGTGGCGGAGCCGGACACGGG
GAAGCAGGAGAAGGAGGAGGTCCGGTGGTGCAAGATGGACTGCGATTGGAAGGCGGGGAA
GGACACCGGGAAGGCCGAGGAGTGCAAGGAGCAGTGCGAGCGCCGCCGCCACGGCGACGA
GCTGCTCCAGGAAGACGGCGACAGCTTCGACAGCTGCGTGAGCAAGTGCCGTGGTCACGG
CGGCTGGTGGGGAAAGGAACGGTGGGAGCGGTGCAGGCAGATATGCAGGCACCGCCAGGA
AGGGGAGGGCGGCGGCGGCGACGACTTCGACGACGGCCGCCGCAACACCGACGACGACAG
GTGCGAGAGGATGTGCCAGCACTGCCACGACCGGCGGGAGAAGAAGCAGTGCATGAAAGG
CTGCAGATATTATGGCGAGTCCGACCTCCTCGGCTTCGACGACGACGGCGGTGACAAACA
CGGCGACCGCTGCCAAACACGGTGCAAGCGCTTCCGGCCGGGGTCGTACGATAGGTGGCA
GTGCATTGTGAGATGCCAGAGCCAGCAGCAGGAGGACGACGAGGAGGAGGAGGTGATGAA
CCACCACGGCGGCGGTGGCCGTGGCCATGGAGGCAGCAGCTGCGAGCAGAAATGCCAGCA
ACGATACCGCCACGAGTATGATAGGCATCAGTGCGTGCGAGACTGCAAAGGCGGCGGCGG
CGGTGGCGGCGCCGGTGGGCGTGGCCGCGAGGGCGACGAACGCCAGCACGACAGGGAGAT
GGTGGTCGAAGCCATCCTCGAGGAGGTGTAAGCAAATGCTGGATGGTCATGAAAGTAGCC
ACCTCTTTCCAGGATCCTCGTCATGTTGCTATGCGTACGTGGTAGGTGCATGTGTGAGGT
AAAATAAATTGCGGTAACTGGAAGTGGCTCTCCAGCCTTTGAGAGAGCCTGTGTGTACGT
CGAATCAATCTGGAAAGCTATGGGGGCATATAAAAGCAAAAATAAAAAATTCACATGGAA
AAAAAAAAAAAAAAAAAAAAAAAAAAA

Homology of Contig U35_2258 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None