barSeed - Barley Seed Development Database

Probe CUST_37148_PI390587928

Source Contig U35_2259

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_37148_PI390587928	Hv_44K_v2	TGCACGCTATTGATTGCCAACTGCGTATCTCCATACTGAGCAGTGCACTTTGTCATATTT	800	GeneList: sienna3 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	3.186	2.437	1.086	0.789	0.257	0.409
Raw	305.482	359.497	141.817	165.328	18.652	32.097

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK368703	843	2e-24	745 - 804	100	60 / 60	plus	ABC06149
JLOC1	JLOC1_11264.1	793	8e-25	683 - 742	100	60 / 60	plus
Harvest35	U35_2259	899	3e-25	801 - 860	100	60 / 60	plus

Contig Sequence (899 bp)

>U35_2259 899 Hv_44K_v2
CTCAGTCCCACCTAACCCAGCCCAAACAAGCCCAATACCAAACCCTCGCAGCCTCCCAGT
CCCACCCACACAACCGAGAGAGATGAGCAGCGGCGGCGCGGACAAGTCCGGCAGCGGCGG
CGGAGGTGCTGGTGGGCCGGTCAAGACGCCGTCAGACTTCCTCAAGTCGATCAGGGGCCG
CCCCGTCGTCGTTAAACTCAACTCGGGCGTCGACTACCGAGGTATTCTGGCTTGCCTGGA
CGGTTATATGAACATTGCGATGGAGCAAACCGAAGAGTACGTGAACGGCCAACTGAAGAA
CAAATATGGTGACGCTTTCATAAGAGGCAACAACGTCCTCTACATCAGCACGTCGAAGCG
GCCCCTCACCGACGGAGCATAGGCCAAGTGGAGCATTCACATCATCATCATCATCATCAT
GTAATTTCAAGGTCGTTAACCCGATTATTGGTTGTGGTGAACTGGTGATCTGACTGGTGC
TGCCTTTGTCACTCTCGTACCTGCTGTCTGCTATATTGCCTGCTGACGGAGACTTATCTG
GAACCATTTCGACTCGATGTTATCTGTGTTTTTTAGCTTCTGAGATGTTTGTGTCCAAGA
TTCTGCGTTCGATATAGATAAGATTTGTGTTTCCAAAAAAAAAAAAAAAATTGTTGCTGC
AGCTGCATAGAACAGACATTACACACCCAGTGTGCTAACACCGTTGATTTTGTTGGCGCT
TTGCTCTCAAACCTACAATAGGTGTCAGCCACGACGAAATGGTATCTTGCATGCGTTTTG
GCATAATTTTCTCCTCTTATTGCACGCTATTGATTGCCAACTGCGTATCTCCATACTGAG
CAGTGCACTTTGTCATATTTTTTTCAATTTACTATGTTTACTAAAAAAAAAAAAAAAAA

Homology of Contig U35_2259 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None