barSeed - Barley Seed Development Database

Probe CUST_37143_PI390587928

Source Contig U35_562

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_37143_PI390587928	Hv_44K_v2	GATCTTAGTTCTTGTCAACGAAACATCTGAATTCTAAGCTGCCAAGTTTCAGTTTCAAAA	683	GeneList: green MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.240	1.229	1.161	0.906	0.369	0.398
Raw	10259.270	15950.287	13184.413	16249.307	2308.310	2715.040

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_75214.3	1823	3e-22	997 - 1052	100	56 / 56	plus	ABC02092 ABC02098 ABC34593
JLOC1	JLOC1_50167.1	1399	1e-22	693 - 748	100	56 / 56	plus
Harvest21	ABC02092	766	1e-23	694 - 753	98	59 / 60	plus	ABC02092
Harvest21	ABC34593	556	2e-21	100 - 155	98	55 / 56	minus	ABC34593
Harvest35	U35_562	764	3e-25	684 - 743	100	60 / 60	plus
Harvest35	U35_38699	556	2e-21	100 - 155	98	55 / 56	minus

Contig Sequence (764 bp)

>U35_562 764 Hv_44K_v2
ACCCTTCGTCCACTCCCCAGTCCCACCTCCAAGTCTCAAACCAAGAGACCTTTCCGCCGC
CGCCTCCGCCGCCGCCGCTAGCTCTAGCGCCCTCGCCGTCGGCCGCAGCCAAGCTCCCGA
CTCGAGCTTCGCGGCCTCCCTCGCCGGTCCAACATGGGTAAGACACGTGGTATGGGAGCT
GGGCGCAAGCTCAAGACCCACAGGAGGAACCAGCGGTGGGCCGACAAAGCCTACAAGAAG
AGCCATCTGGGGAACGAGTGGAAGAAGCCCTTTGCTGGTTCATCCCACGCAAAGGGGATT
GTCCTTGAAAAGATTGGCATTGAGGCCAAGCAGCCCAACTCTGCCATCCGTAAGTGCGCT
CGTGTCCAGCTGGTGAAGAATGGAAAGAAGATTGCCGCCTTTGTGCCAAACGACGGTTGC
CTGAACTTCATCGAGGAAAATGACGAGGTGCTCATCGCCGGTTTCGGTCGGAAGGGGCAT
GCCGTGGGAGACATTCCCGGTGTCCGGTTCAAGGTGGTGAAGGTGTCCGGCGTGTCCCTC
CTTGCCCTCTTCAAGGAAAAGAAGGAGAAGCCCAGATCCTAAAATGGCATCCTAAAATGG
CCCCTCTCCATTCTTCCAAGATCGTCACGGCAGCCATGAAAACTTGCATCCTGCTGGTTA
CTTGCAATGTCTTTTAGCCTGTGGATCTTAGTTCTTGTCAACGAAACATCTGAATTCTAA
GCTGCCAAGTTTCAGTTTCAAAAAAAAAAAAAAAAAGTTTCTAC

Homology of Contig U35_562 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g60400.1	143	1e-98	protein\|40S ribosomal protein S23, putative, expressed
Brachypodium v1_2	Bradi2g54210.1	143	5e-99
Arabidopsis v10	AT5G02960.1	142	8e-94	Ribosomal protein S12/S23 family protein \| chr5:693280-694396 REVERSE LENGTH=142