barSeed - Barley Seed Development Database

Probe CUST_37141_PI390587928

Source Contig U35_563

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_37141_PI390587928	Hv_44K_v2	TGGCGTTGTTTGTTTCAGCTTTAGGCACCAGATTCAAAGCTGAATTTGAAACAAACAGTT	788	GeneList: darkslateblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.727	97.638	1.107	0.930	0.274	0.276
Raw	634.249	66119.993	553.869	741.923	77.546	83.256

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_52516.1	1125	8e-25	987 - 1046	100	60 / 60	plus
Harvest21	ABC02097	848	3e-25	784 - 843	100	60 / 60	plus	ABC02097
Harvest35	U35_563	853	3e-25	789 - 848	100	60 / 60	plus

Contig Sequence (853 bp)

>U35_563 853 Hv_44K_v2
ATTGCAGCCGCCGCCGCTCCCAGCTCCCGCTCCCCTCCCCTCCGCCGCCGCCGCCGCCGC
CTCGTCGGAGTTCTCCCCAGCCCTTTCGCCAACATGGGTAAGACACGTGGTATGGGAGCT
GGGCGCAAGCTCAAGACCCACCGCAGGAACCAGAGGTGGGCAGACAAGGCATACAAGAAG
AGCCACTTGGGTAACGAGTGGAAGAAGCCCTTCGCTGGGTCATCTCACGCCAAGGGCATT
GTTTTGGAGAAGATTGGTATTGAGGCCAAGCAGCCTAACTCTGCCATCCGTAAGTGTGCT
CGTGTCCAGCTTGTGAAGAATGGAAAGAAGATTGCTGCTTTCGTTCCCAATGATGGTTGC
CTGAACTTCATCGAGGAAAATGACGAGGTGTTGATTGCTGGATTCGGTCGTAAGGGACAT
GCTGTGGGAGATATTCCTGGTGTCCGGTTCAAGGTCGTCAAGGTGTCTGGTGTGTCTCTG
CTTGCCCTCTTCAAGGAGAAGAAGGAGAAACCCAGGTCTTAGATTGCTGTGAGCATCTTG
GCTGGTGGCAAGCATGGAGTAGACAGTGTGTTGGCCTTTAGATGTTTAAGGAGGATGGTT
CCTTTGTGTTTACAGCACTTTTAAGTTGATAACTTATGATCGTGTTTGTGAAAACTATGC
CTTGTCACATTTTGCTCCTGTTAAGGGAAAGTGCTACTGTTATGAGTTTAAAAAAAAAAA
AAAAAAAAAAAAAAATTCCCTTATCCTGAAATTCCCTTGGGCATTACATTGGCGGTGTAT
GTAGAATTTGGCGTTGTTTGTTTCAGCTTTAGGCACCAGATTCAAAGCTGAATTTGAAAC
AAACAGTTATTTG

Homology of Contig U35_563 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g60400.1	143	3e-98	protein\|40S ribosomal protein S23, putative, expressed
Brachypodium v1_2	Bradi2g54210.1	143	1e-98
Arabidopsis v10	AT5G02960.1	142	2e-93	Ribosomal protein S12/S23 family protein \| chr5:693280-694396 REVERSE LENGTH=142