barSeed - Barley Seed Development Database

Probe CUST_37132_PI390587928

Source Contig U35_30702

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_37132_PI390587928	Hv_44K_v2	ATGAACTCGCTTCAATTGCACGGATTCTAAATATTGGCACTAGAAAAGTTTATAGTCAGA	8	GeneList: cyan MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.104	1.282	1.334	0.638	0.397	0.417
Raw	216.826	176.213	185.054	126.965	30.343	35.343

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_13417.2	3821	2e-24	579 - 638	100	60 / 60	plus	None
MLOC	MLOC_13417.1	3873	2e-24	622 - 681	100	60 / 60	plus	None
JLOC1	JLOC1_9083.1	3830	8e-25	614 - 673	100	60 / 60	plus
Harvest21	ABC30730	605	3e-25	9 - 68	100	60 / 60	minus
Harvest35	U35_30702	605	3e-25	9 - 68	100	60 / 60	minus

Contig Sequence (605 bp)

>U35_30702 605 Hv_44K_v2
GTTCTTATTCTGACTATAAACTTTTCTAGTGCCAATATTTAGAATCCGTGCAATTGAAGC
GAGTTCATCTCCTGATTTTCTTTCAGTGGAGGCTGATGTCCCCAGAGAACACATGAGATT
CAATAGCATATCAGGTTTAAGCTGCACAGTTGGGCTGTCACCAACAGCATGCAGAATGTC
CAATATACTCTTTGTGACAATTGGTTGGCGCAGACCCAACAGTGCTGTAAAATACTTTAA
GATGGTATTGGAAGGCTTGGATGCCATGAGAGGAAGGCAGCACTTGAGAGCATTTAAAAT
ATGTATGACCTCCTTAGCCCCCTTAGGTCCTTCTGCTGCTGAACCAGTGTTTGCATCATT
GGATCCTCCAGCAAGCAGCAGAAACCGTTCAAAACATCTTGCAATTCCGTCGCTTGCCGG
AACCAAAACAGCTTTTCTCTGAAAACTCAGGAGGATATCTCGCAAGCAGGAATGAGATTG
ATTTCGCACCTTGGGCCGATCATCGGTGACGAGCCGTAGCACCACGGCGTAGAGCGGCTC
CACCGCCTCCCAGCTGGACTTGTCTCCCGCGGATATCAAGTGCGCGAGGCACCTCACCCC
CGCCC

Homology of Contig U35_30702 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g54110.1	1273	6e-103	protein\|expressed protein
Brachypodium v1_2	Bradi3g60080.1	1272	2e-115
Arabidopsis v10	None