barSeed - Barley Seed Development Database

Probe CUST_37130_PI390587928

Source Contig U35_16411

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_37130_PI390587928	Hv_44K_v2	ATGGACACGGACACGCAGGAAAATCTTGCTCATTTTCTTAAGTTTGTTCCAGACAAAAAA	1706	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.841	1.637	1.045	0.766	0.276	0.279
Raw	5540.453	7526.800	4344.417	4994.673	638.201	698.636

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK251386.1	1789	2e-24	1720 - 1779	100	60 / 60	plus	ABC05517 ABC06947 ABC37947
Harvest35	U35_16411	1777	3e-25	1707 - 1766	100	60 / 60	plus

Contig Sequence (1777 bp)

>U35_16411 1777 Hv_44K_v2
GGATTGATTTCCATCCGGGTCCCTTCCGTTCCACGGCAAGTATCCGTCGCACGGTGAGCT
AGTGCCTGCTGCTGCCGCCGCCTAGTCCAATTTCCCTTCTCGTTTATATCGTCCGAAACT
AGGGTTTTACTTCCATCTTCCTCGCCTCGCCGCATTGCCTCTCGTTCTAGTTGGCGGTGG
TCGTCTCCCTCCCCCTCCCCAAACCCTAACGGAAAAAGGCTTCTCCAGATTCAGGTCCCA
CCCCTCGCCGTCGTCCATGGCGCTGCAGTACGTGGAGGCGCAGCGGCAGGCGCGGCCGGA
CCTCGCCGACTGGTACGCCGACCTCGCCGACCTCTACCAGCGCAAGCTCTGGCACCAGCT
CACCCTCAAGCTCGACCAATTCCTCCAGATCCCGGCCGCGCAGACTGGCGACACGCTCAT
ACAGCTCTACAACAATTTCATCTCCGATTTCGAAACGAAAATCAACCTGCTCAAACTCGC
CCAGTTCGCGGTCATAGCCTCGCGCCAATATCCTGACAAGGATGCCGCCATCGCCTTCCT
CGAGGGGATAATCACCAAGCTTCGCGAGACCAGGGAGCTGCGGATCAATGAGCCCATCCT
TCACGTCAAGATGCAGATCGCAGCAATTCACCTCGACAAAGGGAACCACAAAGAGTGCAA
GAACCTGCTGGAGGAAGGGAAGACCACCCTGGATGGCATGACTGATGTGGATCCAACGGT
CCATGCTAGCTTCTACTGGATATCGTCTCAGTACCATAAGTCGCTCCAAGAGTTTGCTGA
GTTCTATAAGAACGCTCTTCTCTATCTGGCGTATACAACCGTGGGGTCTCTCTCAGACTC
ATTCAAGCTTGATTTGGCATTTGATCTGTCCCTTGCAGCCTTGCTGGGGGACAACATCTA
CAACTTCGGGGAATTGTTAGCTCACCCTATTATCATTAGTCTTATTGGGACCAAGGTGGA
GTGGGTTTATCACATGTTACAAGCGTTCAACACCGGCAACCTAGCTCTCTACCAAGAGCT
TTGTGGGGTTCACAATGCTGCTCTTAGTGCACAGCCTGCATTGGTGCAGAATGAACAGAA
ACTGCTTGAGAAGATCAATATTCTGTGTCTGATGGAGATAATCTTCAGCCGGCCATCAGA
AGATAGAACTATCCCATTAAGTGTTATTGCCAAGCAGACTAAGCTTTCAACCAGCGAAGT
GGAATGTCTTCTTATGAAGAGCCTCTCGGTTCATCTCATAGAAGGAATCATCGATGAAGT
CGACAGCACGGTTCACGTCTCGTGGGTCCAGCCCAGAGTACTCGGCATCCCACAGGTGAA
GGCGTTGCGTGAGCGGCTGGACTCGTGGGTCGGCAAAGTGCATAGCACGCTGTTGTCCAT
CGAGGCAGAGACCCCTGATCTCGTGGCGGCTTAGCTTCTTCTTGGCCAGAAATGCTTCTG
AATAGGCAGGCTTTGGTTCTCAGCAGGCGGCGGTGTAAAACGAGAGACCATCTGGCTGTG
CTGCGCGTGCTAGCTGCTCTTTTCTGGATAACGAAAACCTTGTTGCCTTGGGTGTCCTAT
TGATCTGGACTTGTAACTTGCTTCTGTCATCACGGATTGAAACAGAGAAATCATACCGGC
AGAGGGCGTCACTAGTTTTTTCCCAGTTGAACTTTATAATCTGTAATCCAGCGGTTTGCC
AGTTTTTCTTTCTCTTCCATTGTGCTATGGACACGGACACGCAGGAAAATCTTGCTCATT
TTCTTAAGTTTGTTCCAGACAAAAAAAAAAAAAAAAA

Homology of Contig U35_16411 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os01g32800.2	386	protein\|proteasome subunit, putative, expressed
Brachypodium v1_2	Bradi3g34500.2	386
Arabidopsis v10	AT4G19006.1	386	Proteasome component (PCI) domain protein \| chr4:10409349-10411347 REVERSE LENGTH=386