- Probe CUST_37127_PI390587928
- Source Contig U35_30705
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_37127_PI390587928 | Hv_44K_v2 | GACATAAAGTGCCAAAATTTTGAGCATGATAAAGATGATGACGATCAGTTAGCCCCCCAA | 40 | GeneList: darkolivegreen MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.415 | 0.574 | 1.062 | 1.665 | 1.197 | 2.314 |
| Raw | 6.094 | 14.163 | 23.937 | 63.079 | 15.246 | 31.443 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK376270 | 2076 | 2e-24 | 944 - 1003 | 100 | 60 / 60 | plus | ABC12581 |
| MLOC | MLOC_36757.1 | 1667 | 2e-24 | 1162 - 1221 | 100 | 60 / 60 | minus | ABC12581 |
| MLOC | MLOC_36757.2 | 1403 | 2e-24 | 904 - 963 | 100 | 60 / 60 | minus | ABC12581 |
| JLOC1 | JLOC1_23711.1 | 1843 | 8e-25 | 700 - 759 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC30734 | 100 | 3e-25 | 41 - 100 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_30705 | 100 | 3e-25 | 41 - 100 | 100 | 60 / 60 | plus |
Contig Sequence (100 bp)
>U35_30705 100 Hv_44K_v2 GTACTTTGAATCAAGATGTTCCATATTTGAAGAACCAGATGACATAAAGTGCCAAAATTT TGAGCATGATAAAGATGATGACGATCAGTTAGCCCCCCAA
Homology of Contig U35_30705 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |