barSeed - Barley Seed Development Database

Probe CUST_37123_PI390587928

Source Contig U35_16414

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_37123_PI390587928	Hv_44K_v2	CTACAGTTATGTCCCGTGTCGTAGGACTTGAATAAATGTCTGATGTTGGCAGTCAAAAAA	2163	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.846	2.341	1.206	0.712	0.377	0.630
Raw	4427.703	8534.567	3855.643	3612.597	667.119	1226.923

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_50522.1	3043	2e-21	997 - 1050	100	54 / 54	plus
Harvest21	ABC05493	2259	6e-22	2164 - 2217	100	54 / 54	plus	ABC05493
Harvest35	U35_16414	2313	3e-25	2164 - 2223	100	60 / 60	plus

Contig Sequence (2313 bp)

>U35_16414 2313 Hv_44K_v2
AGAAGCTCGGTCTCACCTCACGCACCACCAACACAGTCTTCTCCCCGCCCCGATCACCGT
ACCGACCGACGGACCGCGAGCGGCGCCGCGGCTGACCCAGCGTACGTGATGTGGCGCCAT
GCGGCGGCCCGGCGGTCGGCGCAGATCCGGCGGCTCCTGTCCACGTCCGCCCCCTCGGCG
GGCGCCGGCGCCGCCGTGCGCGGCCCCTGCATCGTGCACAAGCGCGGCACCGACATCCTC
CACGACCCCTGGTACAACAAGGACACGGCGTTCCCCCTCACGGAGCGCGACCGCCTCGGC
CTCCGGGGCCTGCTCCCGCCGCGGGTCATGTCCTTCGAGCAGCAGTACGAGCGCTTCATA
AACTCGTACCATTCGCTGGAGCACAACACGCAGGGGGAGCCCGATTCCGTGGTCTCGCTG
GCCAAGTGGAGGATCCTTAACAGGCTGCACGACCGGAACGAGACGTTGTACTACAGGGTG
CTAATTGACAACATCAAGGATTTTGCGCCCATCATATACACCCCTACTGTGGGCTTGGTC
TGCGAAAACTACAGCGGGCTGTTCAGGCGTCCCCGCGGGATGTACTTCAGTGCAAAGGAT
AAAGGGGAGATGATGTCGATGATTTACAACTGGCCAGCAGAGAAGGTTGACATGATAGTT
GTGACTGATGGGAGTCGCATTCTAGGTTTAGGTGATCTTGGAGTTCAGGGCATAGGCATA
CCTATTGGTAAACTTGATGTTTATGTTGCAGCTGCTGGTATCAACCCACAGAAGGTTCTC
CCAATAATGCTTGACGTGGGAACAAATAATGAAAAACTCCTTGAAGACAAGCTATATTTA
GGATTGAGGCAACCTAGGTTGGAAGGAGAGGAATACTTGGCTGTTGTAGATGAGTTCATG
GAAGCTGTTCATGCACGGTGGCCTAAAGCAATTGTGCAGTTTGAAGACTTCCAAATGAAA
TGGGCATTTGAAACTCTTCAGAGGTATCGGAGCCGATTTTGCATGTTCAATGATGATGTG
CAGGGGACAGCAGGAGTTGCTCTAGCTGGTCTACTTGGAGCTGTTAGAGCACAAGGTCGA
CCCCTCGCAGATTTTACTAAGCAGAAGATAGTTGTGGTGGGAGCTGGAAGTGCTGGGATA
GGTGTGCTTAACATGGCTAAACATGCAATGCTAAGGATGCCAGGGACCCATAAAATTGGA
GAACTCGGCGAAGGACACAATCAATTCTGGGTTCTGGACAAAGATGGCCTTATTACCAAA
AGTAGAAAGGATCTGGATCCAGCCGTTGCTCGTTTTGCTAGAGGTTACGGTCCTGAAGAG
GTCGAAGATCTCCATGAGGGGGCTAGTCTTGTTGAAGTGGTCAAGAAAGTGAGGCCTCAT
GTTCTTTTAGGACTATCTGGAGTTGGCGGGATATTTAACGAGGAGGTTCTCAAGGCTATG
AAAGAATCCGACTCCCCCTGCCCTGCAATTTTTGCAATGTCCAACCCAACAACTAAAGCT
GAATGTACGCCTGAAGATGTATTCAAGCATGTTGGTGAAAATGCAGTATTTGCTAGTGGA
AGCCCTTTCAGTAATGTTACTTTAAGCAATGGTAGAAAAGGCTATGCTAATCAAGCAAAC
AACATGTATCTGTTTCCTGGGATTGGTTTAGGAGCCCTTCTTTCAGGTGCTCGGCATATA
TCGGATGGCATGCTACATGCTGCAGCTGAGTGCCTTGCTTCATACATCACAGATGATGCA
ATTCGAAAAGGAATCCTCTTTCCTTCAATTTCAAGTATCAGGCACATCACCGCACGTGTC
GGCGCTGCAGTCGCCCGTGCTGCTGTTGATGAAGATTTGGCCGAGGGATGCTCTGACATG
GATCCTCGGGACCTCAGGAGCATGTCAGAGTCGGATACGGTGGATTACGTGGCTCGGAAG
ATGTGGTACCCTGTTTACAGCCCACTTGTGAATGACAAGTAGTGTTCGACGAAGCACACC
TGAAGAGACATATCAGGCACATACATTTGTTCTGATTAGTGAATACTTTGCTATTTCGGT
TTAGCTGCTCTACCTGGGAGCATTTCAGCAGATACTGCTGCCACGTCTACTGGCTATGTT
GTTGCCTCATTTGTTTACGTTGACAGGTTCATCAAACATTGCTCAGTTTTGAGACCCGTT
GAGCTACAGTTATGTCCCGTGTCGTAGGACTTGAATAAATGTCTGATGTTGGCAGTCAAA
AAAAAAAAAAAATTTTTGGTCTATGCATGTATATACAGCCTATATGCGGAAAAAAATAGT
ATTTAAATAAAAAGTCAAAAAAAAAAAAAAAAA

Homology of Contig U35_16414 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os10g35960.1	621	protein\|NAD-dependent malic enzyme, mitochondrial precursor, putative, expressed
Brachypodium v1_2	Bradi3g30230.1	612
Arabidopsis v10	AT4G00570.1	607	\| Symbols: NAD-ME2 \| NAD-dependent malic enzyme 2 \| chr4:242817-246522 REVERSE LENGTH=607