barSeed - Barley Seed Development Database

Probe CUST_37115_PI390587928

Source Contig U35_16419

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_37115_PI390587928	Hv_44K_v2	TGTGCTATCTATCTAGAAACCTGTGCTTAAATTGTGCTTGTGGTGCATCCCGATGCCGAT	1516	GeneList: darkgrey MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.025	0.236	1.572	1.626	1.084	1.031
Raw	103.218	1657.356	9971.773	15487.390	3724.990	3885.637

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest35	U35_16419	1615	3e-25	1517 - 1576	100	60 / 60	plus

Contig Sequence (1615 bp)

>U35_16419 1615 Hv_44K_v2
GGAAGTGTGCAGCTGAGCTGTTCTGGGCTGGTTCTGGTACGGCGCCCTCTTCCACTACCT
CTTCCCTTTAACCCATATACTCCGGTCGAGCTCCTTTCGCCACACCACCGCCGTGCCGCG
CCCAACGTCAACTCTGGTGCTCGCCCCACAAGCAGGGACAAAGCCAGCCAGGAAGACAAC
AACGGCACTCTAGCTAGGCATCCAGCCTGCAGATTAAATAAATATGGAGGGTTGTCACTG
CATCGTCGAGTCGTTCCGGCTAACCAACGAACTCCTTATCAAGTACCAGTACATCTCAGA
CTTCTTCATAGCCCTCGCCTACTTCTCCATCCCACTCGAGCTGATCTACTTCGCCAAGAA
GTCGTCATCCTTCCCCTACAGATGGGTGCTCATCCAGTTCAGCGCCTTCATAGTCCTGTG
CGGGACCACTCACCTCATAAACCTCTGGACCTTCACCATGCACACCAAGACCGTCGACAT
CATCATGACGGTGGCTAAGGTCACCACGGCCGTCGTGTCCTGCGCGACCGCCCTCACACT
CATCCATATCATACCTGATTTGTTGGGTGTCAAGACGAGGGAGTTGTTCCTTAAGAAGAA
GGCCGACGAGCTCGACAGGGAGATGGGCCTCGTACGAACGCAGGAGGAGACGGGGAGGCA
TGTCAGGATGCTCATCCATGAGATCAGGAGCACTCTTGACAGGCACACCATCCTCAAGAC
TACTCTTGTTGGGCTCGGGAGGACGTTGGGTCTGGAAGAATGTGCTTTGTGGATGCCGTC
GAGGAGCGGTTCGAGCCTTGAGCTAACTCATACCCTGCGCCACCCGACCCCCGCGGGCTC
ATCTGTGCAGATTAATCTCCCTGTTGTCAACCAAGTCTTCAGTACCAACCGGGCGATCAT
AGTGCCACATACTTCTCCTTTGGCGAGGATCCGCACTGTTCAAGGGCGGCATGTTCCACT
CGATGTGGCTGCCGTAAGAATCCCGCTGCTGCATCTTTCAAACTTTCAGCCCGAGCTTTC
GGCGAAAAGCTACGGAATTATGGTTTTGATACTCCCATCTGATAGTGCAAGGAAATGGCT
TGCTCATGAACTCGAGCTCATCGAGGTCATCGCCGATCAGGTAGCTGTTGCCCTCTCCCA
TGCGGCAATTCTTGAAGAATCAATGCGAGCACGTGATCTACTAACGGAGCAAAATGTCGC
CCTAGATTTAGCTCTGCGAGAGGCTGAAATGGCAGACAACCGCGCTACCACCGACTCATC
TGCTTCTGCAGCCAAGGTGCACAACGCCGACCCATGATCGACGCGTCTTCCCCAACTTCG
CCCGACACCGCTGTTACTCTTCTACCCACCAAAGTATGCCTCGATCCAAATCCTACTCCC
TAGTTGCCTTTGCTTGCACCCTATAGGTACCCCAAACTGTTTCCTTTCGTGCTGCTGCTA
CAGCACTATTTATCTGAACCTATGTAGTTTAAGTTTGGCCCTGCTGTGGCAACCTATCCG
GATTTGTGCTAAGTTATGTGCTATCTATCTAGAAACCTGTGCTTAAATTGTGCTTGTGGT
GCATCCCGATGCCGATGACGAACACAGCGCTATCCTTGATTTCTTGGTTATTCAC

Homology of Contig U35_16419 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g49500.1	637	2e-180	protein\|ethylene receptor, putative, expressed
Brachypodium v1_2	Bradi4g00200.1	635	0.0
Arabidopsis v10	AT1G66340.1	738	4e-157	\| Symbols: ETR1, EIN1, ETR, AtETR1 \| Signal transduction histidine kinase, hybrid-type, ethylene sensor \| chr1:24734698-24737366 FORWARD LENGTH=738