barSeed - Barley Seed Development Database

Probe CUST_37112_PI390587928

Source Contig U35_575

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_37112_PI390587928	Hv_44K_v2	CATGTCGGTGCGTTGCAACGAAAATATAAAAAATACATATAACGCTACATCTGATAAGGT	1375	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_35446.1	396	9e-22	342 - 396	100	55 / 55	plus	ABC30628 ABC50932
JLOC1	JLOC1_22881.1	526	8e-25	343 - 402	100	60 / 60	plus
Harvest35	U35_575	1453	3e-25	1376 - 1435	100	60 / 60	plus

Contig Sequence (1453 bp)

>U35_575 1453 Hv_44K_v2
GGCACCGCAGTACTCCCGTGTCAAGCTCGGTACAGCATTAGGCAAGCTCGGTAGCCGGTA
GGCAAGAAGAACCAACCCGAGACGCAGCTTGTCTCGAGGGTGGCGCGAGGAACCAAGAGG
GTAAGTAAGATGGCATCGACATTGTCATTCCCGATCATCGACATGGGTCTGCTCCGCGGG
GAAGAGCGGCCGGCGGCGATGAACCTTCTGCAGGATGCATGCGAGAACTGGGGCTTCTTC
CAGGTTCTGGACCACGGCATCTCGACGGAGCTGATGGACGAGGTGGAGAAGATGACCAAG
GAGCACTACAAGAGGGTGCGCGAGCAGAGGTTCCTCGAGTTCGCGAGCAAGACGCTGGAG
GACGGCGGCGGCAAGGCGGCGGAGAACCTGGACTGGGAGAGCACCTTCTTCGTGCGCCAC
CTCCCGGAGCCCAACATCGCCGAGATACCCGACCTCGACGACGAGTACAGGCGGGTGATG
AAGCGGTTCGCGTCGGAGCTGGAGACGCTGGCGGAGCGGCTGCTGGACCTGCTCTGCGAG
AACCTCGGCCTCGAGAAAGGGTACCTCACGCGGGCGTTCCGTGGCTCCAAGGGCGTCCCC
ACCTTCGGCACCAAGGTCAGCAGCTACCCGCCGTGCCCGCGCCCGGACCTCGTCAAGGGC
CTCCGCGCCCACACCGACGCCGGCGGCATCATCCTGCTCTTCCAGGACGACCGCGTCGGC
GGGCTCCAGCTGCTCAAGGACGGCGAGTGGGTGGACGTGCCGCCCACGCGCCACTCCATC
GTCGTCAACCTCGGCGACCAGCTGGAGGTGATCACCAACGGCAGGTACAAGAGCGTGCTC
CACCGCGTGGTCGCGCAGACCGACGGCAACCGGATGTCCATCGCCTCCTTCTACAACCCG
GCCAGCGACGCCGTCATCTTCCCGGCGCCGGCGCTGGCGGAGGCGGCCGGCGGGGCGTAC
CCCAAGTTCGTGTTCGAGGACTACATGAAGCTGTACGTGCGCCACAAGTTCGAGGACAAG
GAGCCCAGGTTCGAGGCCTTCAAGTCCGTGGAGAGGCAGCAGAGCTCCAACCTCATCGCT
ACCGCTTAGAGGTAGCGGTCAGCTCTTCTCGGTCTGAATAATAAAGCTTCAAAACTGTGT
CGAGTCACACTGATGAATTTGCTGGTTGCCGTGGGGTCGGTCATGTGTTGGTCACGAGTA
CTCTTTCCCTTCTTTTTTCGCGTGTGTTTGGTACGTAGCTAGTTTGAATGATGTCACTGG
TTTCATCTGATGTGACTTTTCACTGCCTGAAAGGTTGTCCTGGTTTTCTCTCTTGAGAAT
TTCAAAAAAAAAAAAAAAAATTATGTTCAGTTTGTATTTTCTGTATGAGTTCATACATGT
CGGTGCGTTGCAACGAAAATATAAAAAATACATATAACGCTACATCTGATAAGGTCAAAA
AAAAAAAAAAAAA

Homology of Contig U35_575 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g27820.1	323	2e-166	protein\|1-aminocyclopropane-1-carboxylate oxidase protein, putative, expressed
Brachypodium v1_2	Bradi4g31820.1	322	2e-173
Arabidopsis v10	AT1G05010.1	323	2e-127	\| Symbols: EFE, ACO4, EAT1 \| ethylene-forming enzyme \| chr1:1431419-1432695 REVERSE LENGTH=323