- Probe CUST_37111_PI390587928
- Source Contig U35_576
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_37111_PI390587928 | Hv_44K_v2 | GTTGTGTTTTGCCCTTCGATTACTATGTGAATGTAATAAAGCAGTTTTGCTGGACAAAAA | 679 | GeneList: greenyellow MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 8.273 | 3.177 | 1.441 | 0.563 | 0.243 | 0.227 |
| Raw | 235.635 | 138.542 | 57.443 | 38.191 | 3.474 | 4.243 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| JLOC1 | JLOC1_25273.1 | 1903 | 6e-21 | 1517 - 1572 | 98 | 55 / 56 | plus | |
| Harvest21 | ABC00015 | 869 | 3e-25 | 764 - 823 | 100 | 60 / 60 | plus | ABC00015 |
| Harvest21 | ABC00703 | 1503 | 6e-22 | 1399 - 1458 | 97 | 58 / 60 | plus | |
| Harvest21 | ABC00973 | 1168 | 2e-21 | 22 - 77 | 98 | 55 / 56 | minus | |
| Harvest21 | ABC00688 | 768 | 2e-21 | 55 - 110 | 98 | 55 / 56 | minus | |
| Harvest35 | U35_576 | 785 | 3e-25 | 680 - 739 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_581 | 1559 | 1e-23 | 1452 - 1511 | 98 | 59 / 60 | plus | |
| Harvest35 | U35_582 | 571 | 2e-21 | 466 - 521 | 98 | 55 / 56 | plus | |
| Harvest35 | U35_578 | 676 | 2e-21 | 570 - 625 | 98 | 55 / 56 | plus |
Contig Sequence (785 bp)
>U35_576 785 Hv_44K_v2 CCGATCGGGTGCACGCCGGGGCAGCGGGCCGGCATGCCCAACGGCGAGTGCAACCAGCAG GCCAACTCCCTGGCGCAGGCGTTCAACGGCCTCCTCAGGGCCAAGCTCGCCGAGGCCGCA GCCGCCACCATGAAGGAGCTCAAGTACTCCGTCGCCGCCAACTACAACATCCTCAACGAG ATGATGGACAACTCGCTCGTAGCCGGGCTGAGGCACGTGAAGACGGCGTGCTGCGGCTCC GGGAAGCTCAACGCGGAGGTGATGTGCAGCCACCCGGGCACGACGGCGTGCCCCGCCGCC GACCACGATGACTACATGTTCTGGGACATGCTCCACCCCACGCACGCCACCATCCAACGC GGCGTCGTCGCCTTCTTCTACGGCAACGGACCCAAGTACGGCGAGCCCGTCAACTTCGCC ACGCTCGTCACGGGCAAGAACGAATCTCCTGCGATCAAGATGGTCGTCGCCGACGAGTAA ACAATGGATGGCATGCATGATGCATGTGCACGTGCATTTGGAATGGCCGTACGCCGTCTG TTCCTACGTATAAGATGTTTTAACAGTTTAATTTGAAACTGCCAAAACATCTTGTACTTT TAAAAACAGAGGCAGTACTAGATAATAAGTGTGTTATTTTCACGTTATTGTTCCGTACGT GCAACTAGCTCGATCTCTTGTTGTGTTTTGCCCTTCGATTACTATGTGAATGTAATAAAG CAGTTTTGCTGGACAAAAAAAAAAAAAAAAAGAAATGTCGATTTTGCTAAAAAAAAAAAA AAAAA
Homology of Contig U35_576 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | Bradi5g02077.1 | 372 | 4e-52 | |
| Arabidopsis v10 | None |