barSeed - Barley Seed Development Database

Probe CUST_37110_PI390587928

Source Contig U35_577

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_37110_PI390587928	Hv_44K_v2	TACGTCGTCAAGATGGTCACCACCTACATCGAGCACATCCAGGCGCTCTACGACATGGGA	644	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_38823.1	1542	2e-24	749 - 808	100	60 / 60	minus	ABC00015
JLOC1	JLOC1_25273.1	1903	8e-25	741 - 800	100	60 / 60	plus
Harvest21	ABC00703	1503	3e-25	623 - 682	100	60 / 60	plus
Harvest21	ABC00012	1070	3e-25	633 - 692	100	60 / 60	plus
Harvest21	ABC00015	869	6e-22	1 - 54	100	54 / 54	plus	ABC00015
Harvest35	U35_581	1559	3e-25	676 - 735	100	60 / 60	plus
Harvest35	U35_577	709	3e-25	645 - 704	100	60 / 60	plus

Contig Sequence (709 bp)

>U35_577 709 Hv_44K_v2
CACGCGTCCGATCTTAGCCACCCTTGCCTCTTGCTAGCTACCACAGCCACAGGCCACAGC
CACAGTGAGAGCTTGTAGCAGCGGCCATGGCGAGGAGCATTGCTCTGCTCTGCTTCGTCT
TTGTAGTAGGTCTCGTGGGCACGGCGGCGGCGGCGGTAGGCGGCGAGAATGGGGGGCGGC
TGGTGAACGCCGTGTACGTGTTCGGCGACTCGCTGGTGGACGTGGGCAACAACGACTACC
TGCCGGCGCCGGCGCCCAGGGCGAACCGGCCGTACGGCATGGACCTCCCCGGCAGGCCCA
CCGGCCGCTTCACCAACGGCTACAACCTCGCCGACGTCATCTCACAACGTCTGGGTTTCG
AGATGAGCCCCAAGCCGTACCTCTCCATGCTGCCGCACGACAAGATCTTACTCGGCCTCT
GCAAGATTGGCGCCAACTACGCTTCCGGTGGATCCGGCATCCTCGACACCACGGGAAAAG
GGACGCTCACGATGCGGACACAAGTCCAGTACTTCAAGAAGGCGGCGGACAACATGATCT
GCTACCCAAGCAAGGAGGAGCACCTTGCGCGGTCCCTCTTCCTCCTCAGCGGCGGCGGCA
ACGACTTCTCCGCCTTCGACCCCTCCACCGCCAGCCCACAGGCATACGTCGTCAAGATGG
TCACCACCTACATCGAGCACATCCAGGCGCTCTACGACATGGGAGCGCG

Homology of Contig U35_577 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi5g02077.1	372	6e-90
Arabidopsis v10	None