barSeed - Barley Seed Development Database

Probe CUST_37109_PI390587928

Source Contig U35_578

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_37109_PI390587928	Hv_44K_v2	ATAAAGCAGTTTTGCTGGACATCAGTCGCCTGAAATTGAAATGTCGATTTTGCTAAAAAA	604	GeneList: greenyellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	9.887	3.864	1.667	0.494	0.423	0.364
Raw	168.486	102.936	39.967	19.400	3.881	3.424

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction
JLOC1	JLOC1_25273.1	1903	5e-22	1552 - 1606	100	55 / 55	plus
Harvest21	ABC00688	768	3e-25	16 - 75	100	60 / 60	minus
Harvest35	U35_578	676	3e-25	605 - 664	100	60 / 60	plus

Contig Sequence (676 bp)

>U35_578 676 Hv_44K_v2
GCCGCCGCCACCATGAAGGAGCTCAAGTACTCCGTCGCCGCCAACTACAACATCCTCAAC
GAGATGATGGACAACTCGCTCGTAGCCGGGCTGAGGCACGTGAAGACGGCGTGCTGCGGC
TCCGGGAAGCTCAACGCGGAGGTGATGTGCAGCCACCCGGGCACGACGGCGTGCCCCGCC
GCCGACCACGATGACTACATGTTCTGGGACATGCTCCACCCCACGCACGCCACCATCCAA
CGCGGCGTCGTCGCCTTCTTCTACGGCAACGGCCCCAAGTACGGCGAGCCCGTCAACTTC
GCCACGCTCGTCACGGGCAAGAACGAATCTCCTGCGATCAAGATGGTCGTCGCCGACGAG
TAAACCATGGATGGCATGCATGCATGCATGCATGCGCACACGTGCATGTGGAATGGCCGT
ACGCCCTCTCGCCCTACGTATAAGATGTTTTAACAGTTTAATTTGAAACTGCCAAAACAT
CTTGTACTTTTAAAAACAGAGGCAGTACTAGATAATAAGTGTGTTATTTTCACGTTATTG
TTCCGTACGTGCAACTAGCTCGATCTCTTGTTGTGTTTTGCCCTTCGATTACTATGTGAG
TGTAATAAAGCAGTTTTGCTGGACATCAGTCGCCTGAAATTGAAATGTCGATTTTGCTAA
AAAAAAAAAAAAAAAA

Homology of Contig U35_578 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None