barSeed - Barley Seed Development Database

Probe CUST_37108_PI390587928

Source Contig U35_579

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_37108_PI390587928	Hv_44K_v2	ATGCGGACACAATTCCAGTACTTCAAGAAGGCGGCGGACAACATGATCTGCTACCCAAGC	478	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_38823.1	1542	7e-23	902 - 961	98	59 / 60	minus	ABC00015
JLOC1	JLOC1_25273.1	1903	4e-23	588 - 647	98	59 / 60	plus
Harvest21	ABC46430	480	3e-25	421 - 480	100	60 / 60	plus
Harvest21	ABC00703	1503	1e-23	470 - 529	98	59 / 60	plus
Harvest21	ABC00012	1070	1e-23	480 - 539	98	59 / 60	plus
Harvest35	U35_579	538	3e-25	479 - 538	100	60 / 60	plus
Harvest35	U35_581	1559	1e-23	523 - 582	98	59 / 60	plus
Harvest35	U35_577	709	1e-23	492 - 551	98	59 / 60	plus

Contig Sequence (538 bp)

>U35_579 538 Hv_44K_v2
CTGCAAAGCGATAGCCGAGGAAGGAAGATCAAACGACCAAGCAAAGCAAAGCAACCAACC
AACCAACGAGCGAGCGAGCGAGCGAGATCACGGGCATGGGGGAGCAGGACACCAGCGGCA
GCAGCATGGTGGAGGCGCGGGCGCCGGCCAAGAAGAGCGGCAGCGGCCACGCCGACCCGC
GTACCTGTTCNGCGACTCGCTGGTGGACGTGGGCAACAACAACTACCTGCCGGCGCCGGC
CCCCAGTGCGAACCGGCCGTACGGCATGGACCTCCCCGGCAGGCCCACCGGCCGCTTCAC
CAACGGCTACAACCTCGCCGACGTCATCTCACAACGTCTGGGTTTCGAGATGAGCCCCAA
GCCGTACCTCTCCATGCTGCCGCACGACAAGATCTTACTCGGCCTCTGCAAGATTGGCGC
CAACTACGCTTCCGGTGGATCCGGCATCCTCGACACCACGGGAAAAGGGACGCTCACGAT
GCGGACACAATTCCAGTACTTCAAGAAGGCGGCGGACAACATGATCTGCTACCCAAGC

Homology of Contig U35_579 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi5g02077.1	372	4e-60
Arabidopsis v10	None