- Probe CUST_37107_PI390587928
- Source Contig U35_30710
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_37107_PI390587928 | Hv_44K_v2 | CACGCCGGGGGGAAGGGCCGGAAGTGGAGCCGGCTGTGGCGGAGCTCGTCCGGCGGGCAG | 160 | GeneList: skyblue MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.762 | 0.617 | 1.494 | 1.320 | 1.013 | 0.873 |
| Raw | 13.217 | 15.061 | 34.395 | 44.901 | 12.373 | 12.136 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_55669.1 | 1922 | 2e-24 | 1457 - 1516 | 100 | 60 / 60 | minus | ABC16703 |
| JLOC1 | JLOC1_35943.1 | 1768 | 8e-25 | 253 - 312 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC30743 | 220 | 3e-25 | 161 - 220 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_30710 | 220 | 3e-25 | 161 - 220 | 100 | 60 / 60 | plus |
Contig Sequence (220 bp)
>U35_30710 220 Hv_44K_v2 CTCCAGTTTCCAGAGAGCCCCCCCAAGGGAGAGTCCGGTCTGATTTGGTTGGCATCGCCT CTGCGGAGCGTGCGTCGACCGATCCATGGGCGCGTCGGGGAAGTGGATCAAGACGCTGGT GGGGCTCAAGCCTGCGGCGGCGGCGGAAAAGGAGAGGCAGCACGCCGGGGGGAAGGGCCG GAAGTGGAGCCGGCTGTGGCGGAGCTCGTCCGGCGGGCAG
Homology of Contig U35_30710 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |