barSeed - Barley Seed Development Database

Probe CUST_37103_PI390587928

Source Contig U35_16420

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_37103_PI390587928	Hv_44K_v2	GCAAACCTGACGTTCCTTAAAACCATCTAGGGTACACTTGAGTATTTAAACCAAAAATTT	890	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.463	2.225	1.173	0.636	0.270	0.334
Raw	153.529	220.845	99.434	85.594	12.511	17.223

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest35	U35_16420	958	3e-25	891 - 950	100	60 / 60	plus

Contig Sequence (958 bp)

>U35_16420 958 Hv_44K_v2
GAAGGCTTCAAAGAAGAAGGAGAGTCAGAAGACTTGGCTGAATTGGAAGCAAAGCTGGAT
GCGGACTTTAAGAGCAACAAAGGGGAATCAAAAAATAAATCAAAGGCAACTGAGGATACA
AAGAAAAAGCAAAGGCCATTTCTCATGCAGTTCTTCTCACCAATTTTTATCAAGGCATTT
TCCATCACTTTCTTTGGCGAGTGGGGTGACAAGAGCCAGATTGCTACGATTGGCTTGGCT
GCTGATGAGAACCCATTTGGTGTGGTCATTGGGGGAGTCATAGCTCAAGCACTCTGCACT
ACCGCTGCCGTGATGGGAGGGAAGAGCCTGGCCTCTCAGATATCCGAGAAGATGGTTGAA
TTGTCGAGCGGGGTGCTGTTCCTGTTGTTCGGCATAATGTCCTTGTTGTCAGGACCAGAA
GGGCAGTTGTAATTTCTCCAGGAACTTCGGCAGCACTCGCCAGCCAGCATGGCCTACTGG
AGTAGTTACTAAGCTTACCTTATTTGATGGGTGATGGCGACGAAAGCCAGCCGTCCTTGG
CAAACTGGATGGCGATTCATTAGTTTAGTCAACAACACATTGTAACATTTGGCTTGCCAC
TCATAAATAACTTGATGTTACTAAAATCTCTGCTGATGGCTTCCTATTGGTCCAGAAACC
TGGAAATATTCAGTAAAAACCGCTGTAGAATTGTCATGCTCGCTGTACGAGTGTGAACTG
CAGGGCGTTGGCCCTCAATCTCGAAGGGCGACGAGTAGCTTTGAGTTGGGTTATTTGCCT
TTAAAAGGTCCAGATGAATTTTTGTCCTTTTTTCTTTCATCTTAGGGATGGTACATCATA
CAGTACTGGTTCTGTCGTACTGTATCAACATGGCACAGTTTAGTGGACTGGCAAACCTGA
CGTTCCTTAAAACCATCTAGGGTACACTTGAGTATTTAAACCAAAAATTTTAGAAAAA

Homology of Contig U35_16420 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g33630.1	233	1e-62	protein\|uncharacterized protein family UPF0016 domain containing protein, expressed
Brachypodium v1_2	Bradi3g36630.2	211	1e-68
Arabidopsis v10	None