barSeed - Barley Seed Development Database

Probe CUST_37100_PI390587928

Source Contig U35_30715

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_37100_PI390587928	Hv_44K_v2	GCGGCCTCCGTGGAGCGGATCACCCCGCCGGGGTTCCACGCCTTCACGCCCGCCGCCTCG	312	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK357331	2423	2e-24	900 - 959	100	60 / 60	plus	ABC09696
JLOC1	JLOC1_21960.1	3149	8e-25	2918 - 2977	100	60 / 60	minus
Harvest21	ABC30750	402	3e-25	313 - 372	100	60 / 60	plus
Harvest35	U35_30715	402	3e-25	313 - 372	100	60 / 60	plus

Contig Sequence (402 bp)

>U35_30715 402 Hv_44K_v2
CCCTCCGGCCGGGCGACGCGCCTCACCCCGCCTGGCGTCGCCGACTTCAGCCCCGCCGTC
TCGCCCTCCGGGGACTGGGCCGCCGCCGCCTCCCCCGGCGAGCACGGCTGGGCCGGCGAG
GTGCAGGACCTCCGCACCGACGTCTACGTCTTCCGGACCACCGACGGCTCCCGGCGCACG
CTGCTCGTCAAAAACGGCGGCTGGCCCTGCTGGGCCGACGACGCCACGCTCTTCTTCCAC
CGCCGGGACAGCGACGGCTGGTACGGCGTGTACCGCGCCAAGATCGAGGTCTCCGACGAC
GGGCTCCTGTCGGCGGCCTCCGTGGAGCGGATCACCCCGCCGGGGTTCCACGCCTTCACG
CCCGCCGCCTCGCCCGGCGCTCCGGGGCTCGTCGCCGTGGCG

Homology of Contig U35_30715 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g62370.1	689	3e-70	protein\|WD40-like Beta Propeller Repeat family protein, expressed
Brachypodium v1_2	Bradi1g02270.1	710	2e-70
Arabidopsis v10	None