barSeed - Barley Seed Development Database

Probe CUST_370_PI390587928

Source Contig U35_9354

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_370_PI390587928	Hv_44K_v2	TGTTGCCGAACGGCCATTGTAATCCCTGTTGACACCTTCTATGATATATGATGCTCCAAA	450	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.679	3.053	1.246	0.489	0.066	0.017
Raw	3183.780	5984.180	2054.393	1295.813	63.571	16.815

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_62998.1	543	2e-23	479 - 536	100	58 / 58	plus	None
JLOC1	JLOC1_41259.1	535	1e-23	465 - 522	100	58 / 58	plus
Harvest21	ABC26488	507	1e-23	451 - 507	100	57 / 57	plus
Harvest35	U35_9354	524	3e-25	451 - 510	100	60 / 60	plus

Contig Sequence (524 bp)

>U35_9354 524 Hv_44K_v2
GCGTAACCCGCCCCCATTGCGCAGAGTTAACTCCGTCGACTAAGCAAGCAGGAAAAAGTA
AACCAGAATGAGAGGATTTCATGCCATGGTCATCCTGTTGGTGGGATGGCTCGCGCTCAC
CGCACAGTGTCGTCTCGAGGCAGGAAGGAGGAGCTATATAGACGGTGCCGATAACAATGC
TACCGTCCCCTACTCGATATCATCGTTAGATGATGGCAAGTTCAGCCTGAATTTTTGCGG
AGATCATGTTTGTAACTTTGGTACCTGTTACTGCTGTGACAACCAGAAGGGTCGCCCGTG
CTACAAGACGTTTGCTGAGTGCAATTCTAATTGCCCTAAGTGCAATCCCAAGTGCCCAGC
TGAGTCGACGATAGAATTGCAAGCATGACAGAATGGAATGCTCTCATCCCTAGATAAACG
AACAATAATAGATTCTTGTGATAAGCCATATGTTGCCGAACGGCCATTGTAATCCCTGTT
GACACCTTCTATGATATATGATGCTCCAAAAAAAAAAAAAAAAA

Homology of Contig U35_9354 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None