barSeed - Barley Seed Development Database

Probe CUST_3709_PI390587928

Source Contig U35_5241

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_3709_PI390587928	Hv_44K_v2	CTGGGAATAAATCCGTCTATGTACTAATAATCAATTCCATCCATATATCCATATCCATGG	585	GeneList: darkturquoise MasterList: Structural_proteins_Function_Probe_Module

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.333	0.476	1.392	2.463	1.256	0.860
Raw	4.056	11.088	30.564	81.971	15.272	11.415

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_16769.1	955	8e-25	690 - 749	100	60 / 60	plus
Harvest21	ABC16604	679	3e-25	572 - 631	100	60 / 60	plus	ABC16604
Harvest35	U35_5241	700	3e-25	586 - 645	100	60 / 60	plus

Contig Sequence (700 bp)

>U35_5241 700 Hv_44K_v2
CGAGACTAGTTCTCCGCCATGGGAGGTGGAAACAAGGAGTGCGGTAGCGACACAAACAGC
AAAGGGCTTGGGGGCTACTACCCAAGCGCCTACTCGTCTCCACCCATCGCCTACCCTGCA
TACCCTCCTCCACAAGCCGGGCATGGATGCCCTCCTGCTTATAATTATCACCCTCCGCAG
CCACAGGGATACGGGCATGGACATGGTGGCTATCCATCAGCAGGAGCATACGGATACGGG
TATCCACCCTCCAGCTATCCACACCATCAAGGAGGCTATCACGGTCACGGAGGATCTTTG
CTTGTTGCCGGCGGTGCGGCGGCCACGGCGGCCTATGGCGCGCACCACTTGAGCCATGGC
CATCACGGTCACGGCGGATACTACCACCGTCCTGCGGGTTACCATCACCATTACGGCGGC
AAGTTCAAGAAGCATGGACGCTACGGTTATGGCCATGGCGGCAAGTTCAAGCATGGCAAG
CACATGCGCCTCTTTGGAGGGAAGCATGGTCTCTTTGGTGGAAAACACAAGTGGAAATAG
TTTTCTTCCAAGTGGATCTATCCAGAGGAGTGAACTAATCTAATGCTGGGAATAAATCCG
TCTATGTACTAATAATCAATTCCATCCATATATCCATATCCATGGTATAAATATAAAATA
TAAATTGTTTTTTTTGAAAAAAAAAAAAAAAAAAAAAAAA

Homology of Contig U35_5241 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None