barSeed - Barley Seed Development Database

Probe CUST_37097_PI390587928

Source Contig U35_16423

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_37097_PI390587928	Hv_44K_v2	TCTCGATCTGTGCCGCTGTAATCGTGTAACATAACATGCTCCTGAACATGCATGCATGAT	779	GeneList: greenyellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	10.416	6.684	1.127	0.680	0.195	0.273
Raw	1037.827	1113.024	156.086	165.218	15.385	23.141

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_57081.3	582	2e-24	516 - 575	100	60 / 60	plus	ABC05104 ABC05105
MLOC	MLOC_57081.1	1000	2e-24	894 - 953	100	60 / 60	plus	ABC05104 ABC05105
JLOC1	JLOC1_36947.1	1044	8e-25	845 - 904	100	60 / 60	plus
Harvest21	ABC05105	914	3e-25	780 - 839	100	60 / 60	plus	ABC05105
Harvest21	ABC05104	407	3e-25	84 - 143	100	60 / 60	minus	ABC05104
Harvest35	U35_16423	912	3e-25	780 - 839	100	60 / 60	plus

Contig Sequence (912 bp)

>U35_16423 912 Hv_44K_v2
CAGAGAGAAACCAGGAACCAGAGCAGCGGCTCAGGCGAGAGTCCTTCACCCCGATCCAGG
CAAGATGGCATTCGCCGCCTCCACGGCTTGCTGCAAGCCGTCCGCGCTGCTGGCCCCTCG
CGCGTCGGCGTCGTCGTCGTCCCAGGCGCGCCTCTGCAGGCCCTCCACCTCGGCCGCGTT
CCAGGGCCTCAGGGCGCCGGCGCCGGCCTTCGCCCTCGCGCCTGCGCCGCGCCGCCGCGC
GGCGTCCACCGGCATCGTCTGCGGCAAGGTGAGCAAGGGCAGCGTGCCGCCCAACTTCAC
GCTCAAGGACCAGGACGGCAAGACGGTGTCGCTCTCCAAGTTCAAGGGCAAGCCCGTCGT
CCTCTACTTCTACCCCGCCGATGAGACGCCCGGCTGCACCAAACAGGCGTGCGCGTTCAG
GGACTCGTACGAGAAGTACAAGAAGGCGGGGGCGGAGGTGATCGGGATCAGCGGGGACGA
CGCGGCGTCGCACAAGGCGTTCGCAAAGAAGTACCGGCTGCCATTCACGCTGCTGAGCGA
CGAGGGGAACAAGGTGCGCAAGGAGTGGGGGGTGCCGTCGGACCTCTTCGGGACGCTGCC
GGGGAGGCAGACCTACGTGCTCGACAAGAAGGGCGTGGTGCAGTACATCTACAACAACCA
GTTCCAGCCCGAGAAGCACATCGGGGAGACCCTCAAGATCATACAGAACCTCTGAATCCT
CTCTCTCTCTCAGCTTCCCTACGAGTAACAGATTGTTATCTTTTTTTTCCTTGGATAAAT
CTCGATCTGTGCCGCTGTAATCGTGTAACATAACATGCTCCTGAACATGCATGCATGATC
CCCCCCTACGTGTAGAGCTGTTTTGATGTGTAATGCAATGGATTACTACGTACAAAAAAA
AAAAAAAAAAAA

Homology of Contig U35_16423 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g09610.2	218	4e-97	protein\|peroxiredoxin, putative, expressed
Brachypodium v1_2	Bradi1g46620.1	219	4e-107
Arabidopsis v10	AT3G26060.2	217	2e-85	\| Symbols: ATPRX Q \| Thioredoxin superfamily protein \| chr3:9524807-9526123 FORWARD LENGTH=217