- Probe CUST_37096_PI390587928
- Source Contig U35_30717
Probe Details
Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
---|---|---|---|---|
CUST_37096_PI390587928 | Hv_44K_v2 | TATTCAAGAAACTGTGGATGGGATCAGGTCTCTCTCACAACCACCGGAGCAGCGTCGCGC | 3 | GeneList: black MasterList: None |
Probe Values
3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
---|---|---|---|---|---|---|
Normalized | 0.244 | 0.270 | 0.853 | 1.914 | 1.936 | 2.391 |
Raw | 2.960 | 6.427 | 23.933 | 77.581 | 32.093 | 42.510 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
---|---|---|---|---|---|---|---|---|
MLOC | MLOC_71899.1 | 705 | 2e-24 | 54 - 113 | 100 | 60 / 60 | plus | None |
JLOC1 | JLOC1_47806.1 | 924 | 8e-25 | 21 - 80 | 100 | 60 / 60 | plus | |
Harvest21 | ABC30752 | 371 | 3e-25 | 4 - 63 | 100 | 60 / 60 | plus | |
Harvest21 | ABC14527 | 508 | 1e-23 | 20 - 79 | 98 | 59 / 60 | plus | |
Harvest35 | U35_30717 | 371 | 3e-25 | 4 - 63 | 100 | 60 / 60 | plus | |
Harvest35 | U35_6706 | 508 | 1e-23 | 20 - 79 | 98 | 59 / 60 | plus |
Contig Sequence (371 bp)
>U35_30717 371 Hv_44K_v2 CCGTATTCAAGAAACTGTGGATGGGATCAGGTCTCTCTCACAACCACCGGAGCAGCGTCG CGCCTCAGCAGCAGCCGTCGTCGGCCCGCGTCATCGCCGCCGACGGCTCGCTGACGGAGT TCGCCACCTCCGCCTCCTCCTCCTCCCCCGTCAGCGTCTCCGACGTCCTCGCCGCAGGCA ATGCGGGCGGTTCGTTCTTCCTGTGCAATTCCGACGCGCTCTACTTCGACGAGGACGTGC CGGCGCTCGGCGGCGGCGAGCTGCTCCGTCCCGGCCAGATATACTTCGTGCTCCCCCAGG CGATGCTCGGCCGGCCGCTCTCGAGCGCCGACATGGCGGCCATGGCGGTGCGCGCGAGCG AGGCGCTGGCG
Homology of Contig U35_30717 to Model Species (E-value threshold 1e-50)
Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
---|---|---|---|---|
Rice v7 | None | |||
Brachypodium v1_2 | None | |||
Arabidopsis v10 | None |