- Probe CUST_37095_PI390587928
- Source Contig U35_16424
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_37095_PI390587928 | Hv_44K_v2 | AATTATTGATGCTCGTCTGATGCAAGCCCGTGAGATCCTTGAGGATCTGTTAAGGCCAAT | 628 | GeneList: lightyellow MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.131 | 0.416 | 1.056 | 2.167 | 1.365 | 1.327 |
| Raw | 30.868 | 167.625 | 348.210 | 1140.845 | 253.010 | 265.739 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK356945 | 1426 | 2e-24 | 794 - 853 | 100 | 60 / 60 | plus | ABC05396 ABC52425 |
| MLOC | AK365203 | 3163 | 2e-24 | 146 - 205 | 100 | 60 / 60 | minus | ABC03142 ABC03143 ABC03767 ABC05396 |
| MLOC | MLOC_64563.4 | 726 | 2e-24 | 502 - 561 | 100 | 60 / 60 | plus | ABC05396 |
| MLOC | MLOC_64563.5 | 1249 | 2e-24 | 774 - 833 | 100 | 60 / 60 | plus | ABC05396 ABC52425 |
| MLOC | MLOC_64563.1 | 2916 | 2e-24 | 2438 - 2497 | 100 | 60 / 60 | plus | ABC05396 ABC52425 |
| MLOC | MLOC_64563.2 | 2913 | 2e-24 | 2438 - 2497 | 100 | 60 / 60 | plus | ABC05396 ABC52425 |
| JLOC1 | JLOC1_42411.3 | 3204 | 8e-25 | 2430 - 2489 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_42411.2 | 3667 | 8e-25 | 2896 - 2955 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_42411.1 | 3210 | 8e-25 | 2439 - 2498 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC05396 | 1407 | 3e-25 | 786 - 845 | 100 | 60 / 60 | plus | ABC05396 |
| Harvest21 | ABC05395 | 718 | 3e-25 | 629 - 688 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_16425 | 1440 | 3e-25 | 793 - 852 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_16424 | 718 | 3e-25 | 629 - 688 | 100 | 60 / 60 | plus |
Contig Sequence (718 bp)
>U35_16424 718 Hv_44K_v2 GCCGCCGCCGCCATCCCGATAGAGAGAGAGAGCGTGTAGGCGCTGGGCGAGCAGGCCGCC ACCGCAACCCTAGCCAGCTAGCCCAGCTAACGCCCCCGGTTGGAGAGCTGCTGCTGCTGC AGAGATGTCGTCGGGACGGTACATGGCCTACTCGCCCTCCCCGTCCACCACCCCGCACTC CCCGCGCATCTCTGGCCTCCGCGCCTCCTCCGCCGCCGTCGCCGACCAGGAGAAGTACCT TGCGGAACTGCTCGCGGAGCGCCACAAGCTGAACCCGTTTGTCCCGGTGCTCCCTCATAG CATCCGCTTGCTGAATCAAGAGTTCATCAGCAGCTTATAGCTGGCTTGGAGGCTCTCAAG GCAGCTCGTCTGGACTAATTGGGAAGAAAACAATGAGGGTTGATATCCCAGTAGACAAAT ATCCAACATACAATTTTGTTGGTCGCATCCTTGGTCCCAGAGGAAATTCCTTGAAGCGAG TGGAGGCAACTACTGACTGCCGTGTTCTTATAAGAGGCCGCGGTAGCATTAAAGATCCAG CTCGGGAGGACATGATGCGTGGAAAGCCAGGATATGAACATCTTAATGAACCCCTACATA TATTGGTTGAGGCAGAGCTGCCTGTTGAAATTATTGATGCTCGTCTGATGCAAGCCCGTG AGATCCTTGAGGATCTGTTAAGGCCAATGGACGAGTCTCAGGACTTCTTCAAGAAGCA
Homology of Contig U35_16424 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os02g49080.1 | 287 | 3e-68 | protein|KH domain containing protein, putative, expressed |
| Brachypodium v1_2 | Bradi3g56540.2 | 284 | 3e-69 | |
| Arabidopsis v10 | AT4G26480.1 | 308 | 8e-64 | RNA-binding KH domain-containing protein | chr4:13372885-13375793 REVERSE LENGTH=308 |