barSeed - Barley Seed Development Database

Probe CUST_37093_PI390587928

Source Contig U35_16425

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_37093_PI390587928	Hv_44K_v2	GAGCTATGACTGGGGTTTTGATTTAAGGTTCTTGTGCTTGTATTTGAACTTTTGAAGAAT	1258	GeneList: darkturquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.347	0.662	1.202	2.075	1.164	1.154
Raw	754.011	2373.485	3665.090	9680.600	1952.327	2111.857

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK356945	1426	2e-24	1257 - 1316	100	60 / 60	plus	ABC05396 ABC52425
JLOC1	JLOC1_42411.3	3204	8e-25	2896 - 2955	100	60 / 60	plus
JLOC1	JLOC1_42411.2	3667	8e-25	3359 - 3418	100	60 / 60	plus
JLOC1	JLOC1_42411.1	3210	8e-25	2902 - 2961	100	60 / 60	plus
Harvest21	ABC05396	1407	3e-25	1250 - 1309	100	60 / 60	plus	ABC05396
Harvest21	ABC52425	492	6e-22	123 - 182	97	58 / 60	minus	ABC52425
Harvest35	U35_16425	1440	3e-25	1259 - 1318	100	60 / 60	plus

Contig Sequence (1440 bp)

>U35_16425 1440 Hv_44K_v2
GCTCTTCCTCCTCTCGCCGCCGCCGCCATCCCGATAGAGAGAGAGAGCGTGTAGGCGCTG
GGCGAGCAGGCCGCCACCGCAACCCTAGCCAGCTAGCCCAGCTAACGCCCCCGGTTGGAG
AGCTGCTGCTGCTGCAGAGATGTCGTCGGGACGGTACATGGCCTACTCGCCCTCCCCGTC
CACCACCCCGCACTCCCCGCGCATCTCTGGCCTCCGCGCCTCCTCCGCCGCCGTCGCCGA
CCAGGAGAAGTACCTTGCGGAACTGCTCGCGGAGCGCCACAAGCTGAACCCGTTTGTCCC
GGTGCTCCCTCATAGCATCCGCTTGCTGAATCAAGAAATTTTACGTGTTTCCACACTATT
GGAGAACGCCTCCCTTTTAAACCAAAGTGGCTTTGAACATGGTAGTCCACTAACATCGGG
AGGATTATATTCAAATGGAGCAGCAACTGATATGAATGGATGGACATCAGCGTTTCAATC
AGAAAGTTCATCAGCAGCTTATAGCTGGCTTGGAGGCTCTCAAGGCAGCTCGTCTGGACT
AATTGGGAAGAAAACAATGAGGGTTGATATCCCAGTAGACAAATATCCAACATACAATTT
TGTTGGTCGCATCCTTGGTCCCAGAGGAAATTCCTTGAAGCGAGTGGAGGCAACTACTGA
CTGCCGTGTTCTTATAAGAGGCCGCGGTAGCATTAAAGATCCAGCTCGGGAGGACATGAT
GCGTGGAAAGCCAGGATATGAACATCTTAATGAACCCCTACATATATTGGTTGAGGCAGA
GCTGCCTGTTGAAATTATTGATGCTCGTCTGATGCAAGCCCGTGAGATCCTTGAGGATCT
GTTAAGGCCAATGCAGGACGAGTCTCAGGACTTCTTCAAGAAGCAGCAGCTCCGGGAGCT
TGCAATGCTCAACGGCACCCTCCGTGAAGAAGGGATGCAAAGATCTGGTTCCGCATCCCC
TTTCCACAACAGCCTTGGAATGAAGAGGGCCAAGACAAGGGGGTAAAAGGCCATGAGTAC
CATGGAAGAACCAATCATCTGTCCTGAGACGGAAACTGAGTATGCCTATGGGTCTGCCTT
CGTGGCTAATGGCGCAAAAATGGTCTCGCACCGCTAGCATCGGAGCAGCCCGTACTTGAT
AATACATATGCCTGGAGTCGTGTTCGCTGCTACTGGAGAGGTTTGGTTATGGAAAGACTG
GGTGTCGACTGTCGAGCTATTTATCGGGTTGTGCAAGAAGTGGTTTGTGTATTGCTATGA
GCTATGACTGGGGTTTTGATTTAAGGTTCTTGTGCTTGTATTTGAACTTTTGAAGAATTT
TAACTGATTATGTTATTTGGGCTTGAAATGTTGTAATTTGTTACAGTTATAGTATTGCTT
AATAGATGGATATTATAATAAAAAAAAAAAAAAATTTGCCTTCAAAAAAAAAAAAAAAAA

Homology of Contig U35_16425 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g49080.1	287	4e-162	protein\|KH domain containing protein, putative, expressed
Brachypodium v1_2	Bradi3g56540.2	284	9e-166
Arabidopsis v10	AT5G56140.1	315	1e-123	RNA-binding KH domain-containing protein \| chr5:22725462-22727932 FORWARD LENGTH=315