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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_37091_PI390587928Hv_44K_v2GCCAGATTTCTCCAACATTGACTTGAAACACGGAAAAATGCATATACACATAGATTATAC739GeneList: darkgrey
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 0.0860.0651.4632.0552.0230.748
Raw 6.9346.546177.496363.743141.40355.757



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCMLOC_30326.18872e-24747 - 80610060 / 60plus ABC05013 ABC40259
JLOC1JLOC1_20076.19238e-25745 - 80410060 / 60plus
Harvest21ABC050139653e-25740 - 79910060 / 60plusABC05013
Harvest35U35_164269653e-25740 - 79910060 / 60plus



Contig Sequence (965 bp)

>U35_16426 965 Hv_44K_v2
CCTGACTTACAATCTCCTCTGCTAGCTCTCCTTTCAGTTCCAACCGCAATGGCTGCCACG
AGAACCATTCTCCTCGCCGTGGCCACAATGACCATCCTGAGCACCGCATCGGCGGCAATC
TACAACGTCGGCGAGCCAGGTGGTGCATGGGACCTCAGCACCAACTACGGCACCTGGGCG
TCCTCCAGGAACTTCCACCCAAGCGACCGGATCGTCTTCAAATACTCTCCTCAGGCACAC
GACGTCCTCGAGGTCAGCAAGGCCGACTACGACTCTTGTAGCACCGCCAGCCCAATCGCC
ACCCTCAACTCCGGGAATGATGTCGTCTCCCTCACGGCCACCGGTACCCGCTACTTCATC
TGCGGCTTCCCGGGCCACTGCGCCGGGGGAATGAAGGTGAAGATCGATGTCGTGCCGAGC
TCCTCTTCTTCCTCGCCTGCCCCGGCCAGCGGTCCCAGTGCAAGTAACGCTCCCCCGCCG
GTGCCTGTCTCAGCCGCCACCTCTGTGGCCACCACAGGGTTTGGGCTCGCCATCTTACTT
ATCGTTGCCGGCCTCATGTCTTGAATGTAATTTGCAACGGCATACACGTGCAATTTCCAT
ATTAGAAGTAGCGATTACTAGCTACCATATATGCGTATATTCTAAAGTGTAGTAATTATA
GGGTATGTTGTATGTATCGAGGCTCCGCATTTTTACACAGTATTTTACCTGAAACAATTT
GATCAATACTGCAAGTAGAGCCAGATTTCTCCAACATTGACTTGAAACACGGAAAAATGC
ATATACACATAGATTATACATGTAATATCATTGTTTGATTTGTGTTGAATATGTGAATGA
GTATCCTATAGTTGGAGTTTTTCATGTATTTAAGTTGCAGAGTCATGTATTCATCATAAT
TTTTTAGAATACTTTATGTACTCCATATATACATTTTGAGCTTAGCAGTTGCTCTATTAT
TTCAC



Homology of Contig U35_16426 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7None
Brachypodium v1_2Bradi3g09220.11764e-60
Arabidopsis v10None