barSeed - Barley Seed Development Database

Probe CUST_37090_PI390587928

Source Contig U35_580

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_37090_PI390587928	Hv_44K_v2	TTCACCAACGGCTACAACCTCGCCGACGTCATCTCACAACGTCTGGGTTTCGAGATGAGC	320	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_38823.1	1542	2e-24	1085 - 1144	100	60 / 60	minus	ABC00015
JLOC1	JLOC1_25273.1	1903	8e-25	405 - 464	100	60 / 60	plus
Harvest21	ABC46430	480	3e-25	238 - 297	100	60 / 60	plus
Harvest21	ABC00703	1503	3e-25	287 - 346	100	60 / 60	plus
Harvest21	ABC00012	1070	3e-25	297 - 356	100	60 / 60	plus
Harvest35	U35_581	1559	3e-25	340 - 399	100	60 / 60	plus
Harvest35	U35_580	507	3e-25	321 - 380	100	60 / 60	plus
Harvest35	U35_579	538	3e-25	296 - 355	100	60 / 60	plus
Harvest35	U35_577	709	3e-25	309 - 368	100	60 / 60	plus

Contig Sequence (507 bp)

>U35_580 507 Hv_44K_v2
TCGAGCACTGTTGGCCTACTGTGACACCAAAACCTATCTTAGCCACCCTTGCCTCTTGCT
AGCTACCACAGCCACAGTGAGAGCTTGCAGCAGCGGCCATGGCGAGGAGCATTGCTCTGC
TCTGCTTCGTCCTCGTCGGCGCCGTGTGCGCCTCGACGGCGGCGGCGGCGGGCGGCGAGA
ATGGGGGGCGGCTGGTGAACGCCGTGTACGTGTTCGGCGACTCGCTGGTGGACGTCGGCA
ACAACGACTACCTGCCGGCGCCGGCGCCCAGGGCGAACCGGCCGTACGGCATGGACCTCC
CCGGCAGGCCCACCGGCCGCTTCACCAACGGCTACAACCTCGCCGACGTCATCTCACAAC
GTCTGGGTTTCGAGATGAGCCCCAAGCCGTACCTCTCCATGCTGCCGCACGACAAGATCT
TACTCGGCCTCTGCAAGATTGGCGCCAACTACGCTTCCGGTGGATCCGGCATCCTCGACA
CCACGGGAAAGGGACGCTCACGATGCG

Homology of Contig U35_580 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi5g02077.1	372	5e-54
Arabidopsis v10	None