barSeed - Barley Seed Development Database

Probe CUST_37088_PI390587928

Source Contig U35_581

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_37088_PI390587928	Hv_44K_v2	TTGTGTTTTGCCCTTCGATTACTATGTGAGTGTAATAAAGCAGTTTTGCTGGACAAAAAA	1452	GeneList: greenyellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	8.528	3.165	1.546	0.546	0.283	0.201
Raw	268.634	156.943	67.864	39.918	5.362	3.690

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_25273.1	1903	5e-22	1518 - 1572	100	55 / 55	plus
Harvest21	ABC00703	1503	1e-23	1400 - 1459	98	59 / 60	plus
Harvest21	ABC00015	869	1e-23	765 - 824	98	59 / 60	plus	ABC00015
Harvest21	ABC00973	1168	2e-22	22 - 76	100	55 / 55	minus
Harvest21	ABC00688	768	2e-22	55 - 109	100	55 / 55	minus
Harvest35	U35_581	1559	3e-25	1453 - 1512	100	60 / 60	plus
Harvest35	U35_576	785	1e-23	681 - 740	98	59 / 60	plus
Harvest35	U35_582	571	2e-22	467 - 521	100	55 / 55	plus
Harvest35	U35_578	676	2e-22	571 - 625	100	55 / 55	plus

Contig Sequence (1559 bp)

>U35_581 1559 Hv_44K_v2
AATACGCGACGGGGCATTGTAAGTCGAGCACTGTTGGCCTAGACACCAAAACCTATCTTA
GCCACCCTTGCCTCTTGCTAGCTACCACAGCCACAGTGAGAGCTTGCAGCAGCGGCCATG
GCGAGGAGCATTGCTCTGCTCTGCTTCGTCCTCGTCGGCGCCGTGTGCGCCTCGACGGCG
GCGGCGGCGGGCGGCGAGAATGGGGGGCGGCTGGTGAACGCCGTGTACGTGTTCGGCGAC
TCGCTGGTGGACGTGGGCAACAACGACTACCTGCCGGCGCCGGCGCCCAGGGCGAACCGG
CCGTACGGCATGGACCTCCCCGGCAGGCCCACCGGCCGCTTCACCAACGGCTACAACCTC
GCCGACGTCATCTCACAACGTCTGGGTTTCGAGATGAGCCCCAAGCCGTACCTCTCCATG
CTGCCGCACGACAAGATCTTACTCGGCCTCTGCAAGATTGGCGCCAACTACGCTTCCGGT
GGATCCGGCATCCTCGACACCACGGGAAAAGGGACGCTCACGATGCGGACACAAGTCCAG
TACTTCAAGAAGGCGGCGGACAACATGATCTGCTACCCAAGCAAGGAGGAGCACCTTGCG
CGGTCCCTCTTCCTCCTCAGCGGCGGCGGCAACGACTTCTCCGCCTTCGACCCCTCCACC
GCCAGCCCACAGGCATACGTCGTCAAGATGGTCACCACCTACATCGAGCACATCCAGGCG
CTCTACGACATGGGAGCGCGCATGGTGGGGATCCTCGACGTGCCGCCGATCGGGTGCACG
CCGGGGCAGAGGGCCGGCATGCCCAACGGCGAGTGCAACCAGCAGGCCAACTCCCTGGCG
CAGGCGTTCAACGGCCTCCTCAAGGCCAAGCTCGCCGAGGCCGCCGCCGCCACCATGAAG
GAGCTCAAGTACTCCGTCGCCGCCAACTACAACATCCTCAACGAGATGATGGACAACTCG
CTCGTAGCCGGGCTGAGGCACGTGAAGACGGCGTGCTGCGGCTCCGGGAAGCTCAACGCG
GAGGTGATGTGCAGCCACCCGGGCACGACGGCGTGCCCCGCCGCCGACCACGATGACTAC
ATGTTCTGGGACATGCTCCACCCCACGCACGCCACCATCCAACGCGGCGTCGTCGCCTTC
TTCTACGGCAACGGCCCCAAGTACGGCGAGCCCGTCAACTTCGCCACGCTCGTCACGGGC
AAGAACGAATCTCCTGCGATCAAGATGGTCGTCGCCGACGAGTAAACCATGGATGGCATG
CATGCATGCATGCATGCGCACACGTGCATGTGGAATGGCCGTACGCCCTCTCTTCCTACG
TATAAGATGTTTTAACAGTTTAATTTGAAACTGCCAAAACATCTTGTACTTTTAAAAACA
GAGGCAGTACTAGATAATAAGTGTGTTATTTTCACGTTATTGTTCCGTACGTGCAACTAG
CTCGATCTCTTGTTGTGTTTTGCCCTTCGATTACTATGTGAGTGTAATAAAGCAGTTTTG
CTGGACAAAAAAAAAAAAAAAAATTGAAATGTCGATTTTGCTAAAAAAAAAAAAAAAAA

Homology of Contig U35_581 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os12g37910.2	403	7e-83	protein\|GDSL-like lipase/acylhydrolase, putative, expressed
Brachypodium v1_2	Bradi5g02077.1	372	2e-158
Arabidopsis v10	None