barSeed - Barley Seed Development Database

Probe CUST_37087_PI390587928

Source Contig U35_16428

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_37087_PI390587928	Hv_44K_v2	GGAGTGTCGTGAAATACGTCAAGAGTTCCTTCAACACTACTGAAGACATATTTGCTCTAG	362	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_54333.3	2730	2e-24	2107 - 2166	100	60 / 60	minus	ABC05048
MLOC	MLOC_54334.1	884	6e-24	332 - 390	100	59 / 59	plus	ABC05048
JLOC1	JLOC1_34970.1	1872	8e-25	370 - 429	100	60 / 60	plus
Harvest21	ABC05047	862	3e-25	310 - 369	100	60 / 60	plus
Harvest21	ABC05048	615	1e-24	57 - 115	100	59 / 59	plus	ABC05048
Harvest35	U35_16428	915	3e-25	363 - 422	100	60 / 60	plus
Harvest35	U35_16429	626	1e-24	57 - 115	100	59 / 59	plus

Contig Sequence (915 bp)

>U35_16428 915 Hv_44K_v2
AGAAAAAAGGGGCAATCTGCAAACCTGCCATCTGATGGAGTGTTAGTGGACAAGCGAGCT
CGCGCTCACATCCGCTGCTGCAGACGACGGCCAAACAGTAGTTTCTCCACGCATCGTCCG
CCGGACACGCCTCCCAGCTCCATCGCCAACAATCCCAAGGCGGGGGATCTAGCCAGCCAT
GATGGCATGTGCCCTCTCCATCGCCCAGCCCACAGCCCTCGCGCGGTGCGGCGGCGGCGG
CAGCAGCAGCCAGAGCGTCCCCAGGGGTCTCCCGAAGCTGCGAAGCCCCACGGTTTCAGG
CAGGATGGGAAGTCGCGCTGTCGTTGCCAGGGCTGCGCAGGACAGTTCAGGAGCCTCCAC
CGGGAGTGTCGTGAAATACGTCAAGAGTTCCTTCAACACTACTGAAGACATATTTGCTCT
AGCGGGTATCGGCTTTGCATCAATTGCGGCATTCTGGGCTTCCATGATGCTTGTTGGGGT
CATCGACAAGCTCCCTGTTCTCCCTCTTTTCTTTGAACTAATCGGAATAGCAGTTGCATG
GTGGTTTATCTATGGGAACCTCCTCTTCAAGCCGGACAGAGCAAGGTTCCTGGAGAACAT
CAAAAGCTCAGTATCTCGAATCTTGGGGCAGTAACTTCACCGCGAAGACGAAGTACATCC
TGCCTAAGACGTACATTTTCTTGGGGCCTGTCAGAAACATTTAGCTGTGGGCTCATGTGA
GGCATCTGCGTCACCGTTGTTCGTCCTATAGATGTAATACGCTATCTCCTGTACAGGTTA
GAGTGAAATCGAGCATTCTTCTGGTGGCAAAACTTGAGTGCTTGTTCTCCCCGAATTAAT
TTTTCGACAGCAGGAAGGATGTACTTATAGAAAGTGCATTTTGGCTTTGGACTTTCGCAG
AACATCATGAAATAA

Homology of Contig U35_16428 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g55570.1	152	5e-56	protein\|expressed protein
Brachypodium v1_2	Bradi2g50526.1	148	3e-70
Arabidopsis v10	None