barSeed - Barley Seed Development Database

Probe CUST_37086_PI390587928

Source Contig U35_582

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_37086_PI390587928	Hv_44K_v2	TGTTTTGCCCTTCGATTACTATGTGAGTGTAATAAAGCAGTTTTGCTGGACATCAAAAAA	469	GeneList: greenyellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	7.822	3.107	1.417	0.593	0.231	0.190
Raw	253.295	156.725	64.076	43.831	4.711	2.980

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction
JLOC1	JLOC1_25273.1	1903	5e-22	1521 - 1575	100	55 / 55	plus
Harvest21	ABC00973	1168	2e-22	19 - 73	100	55 / 55	minus
Harvest21	ABC00688	768	2e-22	52 - 106	100	55 / 55	minus
Harvest35	U35_582	571	3e-25	470 - 529	100	60 / 60	plus
Harvest35	U35_578	676	2e-22	574 - 628	100	55 / 55	plus
Harvest35	U35_581	1559	6e-22	1456 - 1515	97	58 / 60	plus

Contig Sequence (571 bp)

>U35_582 571 Hv_44K_v2
GACGGCGTGCTGCGGCTCCGGGAAGCTCAACGCGGAGGTGATGTGCAGCCACCCGGGCAC
GACGGCGTGCCCCGCCGCCGACCACGATGACTACATGTTCTGGGACATGCTCCACCCCAC
GCACGCCACCATCCAACGCGGCGTCGTCGCCTTCTTCTACGGCAACGGCCCCAAGTACGG
CGAGCCCGTCAACTTCGCCACGCTCGTCACGGGCAAGAACGAATCTCCTGCGATCAAGAT
GGTCGTCGCCGACGAGTAAACCATGGATGGCATGCATGCATGCATGCATGCGCACACGTG
CATTTGCAATGGCCGTACGCCCTCTCTTCCTACGTATAAGATGTTTTGACAGTTTAATTT
GAAACTGCCAAAACATCTTGTACATTCAAAAACAGAGGCAGTACTAGATAATAAGTGTGT
TATTTTCACGTTATTATTTCGTACGTGCAACTAGCTCGATCTCTTGTTGTGTTTTGCCCT
TCGATTACTATGTGAGTGTAATAAAGCAGTTTTGCTGGACATCAAAAAAAAGAAATTGAA
ATGTCGATTTTGCTAAAAAAAAAAAAAAAAA

Homology of Contig U35_582 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None