barSeed - Barley Seed Development Database

Probe CUST_37085_PI390587928

Source Contig U35_16429

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_37085_PI390587928	Hv_44K_v2	ATACGCTATCTCCTGTACAGGTTAGAGTCTTCTGGTGGCAAAACTTGAGTGCTTGTTCTC	449	GeneList: salmon MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	7.720	6.041	1.167	0.634	0.199	0.481
Raw	338.275	443.103	70.626	67.909	5.466	17.685

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_54334.1	884	2e-24	725 - 784	100	60 / 60	plus	ABC05048
Harvest21	ABC05048	615	3e-25	450 - 509	100	60 / 60	plus	ABC05048
Harvest35	U35_16429	626	3e-25	450 - 509	100	60 / 60	plus

Contig Sequence (626 bp)

>U35_16429 626 Hv_44K_v2
GGAAGTCGCGCTGTCGTTGCCAGGGCTGCGCAGGACAGTTCAGGAGCCTCCACCGAGAGT
GTCGTGAAATACGTCAAGAGTTCCTTCAACACTACTGAAGACATATTTGCTCTAGCGGGT
ATCGGCTTTGCATCAATTGCGGCATTCTGGGCTTCCATGATGCTTGTTGGGGTCATCGAC
AAGCTCCCTGTTCTCCCTCTTTTCTTTGAACTAATCGGAATAGCAGTTGCATGGTGGTTT
ATCTATGGGAACCTCCTCTTCAAGCCGGACAGAGCAAGGTTCCTGGAGAACATCAAAAGC
TCAGTATCTCGAATCTTGGGGCAGTAACTTCACCGCGAAGACGAAGTACATCCTGCCTAA
GACGTACATTTTCTTGGGGCCTGTCAGAAACATTTAGCTGTGGGCTCATGTGAGGCATCT
GCGTCACCGTTGTTCGTTCTATAGATGTAATACGCTATCTCCTGTACAGGTTAGAGTCTT
CTGGTGGCAAAACTTGAGTGCTTGTTCTCCCCGAATTAATTTTTCGACAGCAGGAAGGAT
GTACTTATAGAAAGTGCATTTTGGCTTTGGACTTTCGCAGAACATCATGAAAATAAGTCC
TCTTGTGGCAAAAAAAAAAAAAAAAA

Homology of Contig U35_16429 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi2g50526.1	148	9e-53
Arabidopsis v10	None