- Probe CUST_37084_PI390587928
- Source Contig U35_583
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_37084_PI390587928 | Hv_44K_v2 | GATTCATTGTAGCTTATGCTGAGTGTTCAGTTCTACATGTTCGTCTGTCCTTTGCAATCA | 771 | GeneList: thistle2 MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.248 | 0.881 | 2.297 | 1.789 | 0.588 | 0.964 |
| Raw | 37.098 | 208.070 | 442.374 | 551.325 | 61.735 | 112.703 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_60487.3 | 3477 | 2e-24 | 2246 - 2305 | 100 | 60 / 60 | minus | ABC18459 ABC26738 ABC30536 |
| MLOC | MLOC_60488.7 | 5010 | 2e-24 | 2527 - 2586 | 100 | 60 / 60 | minus | ABC03926 ABC03927 ABC18459 ABC26738 ABC30536 ABC34594 ABC39256 |
| MLOC | MLOC_60488.2 | 9067 | 2e-24 | 7836 - 7895 | 100 | 60 / 60 | minus | ABC18459 ABC26738 ABC30536 ABC34594 ABC37694 |
| MLOC | AK252755.1 | 1285 | 7e-23 | 983 - 1042 | 98 | 59 / 60 | plus | ABC18459 ABC26738 |
| JLOC1 | JLOC1_39449.1 | 3777 | 8e-25 | 1058 - 1117 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC26738 | 519 | 3e-25 | 428 - 487 | 100 | 60 / 60 | plus | ABC26738 |
| Harvest21 | ABC18459 | 744 | 3e-25 | 436 - 495 | 100 | 60 / 60 | plus | ABC18459 |
| Harvest35 | U35_19386 | 732 | 3e-25 | 424 - 483 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_583 | 831 | 3e-25 | 772 - 831 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_41137 | 731 | 1e-23 | 134 - 193 | 98 | 59 / 60 | minus | |
| Harvest35 | U35_19387 | 577 | 1e-23 | 423 - 482 | 98 | 59 / 60 | plus | |
| Harvest35 | U35_19385 | 1041 | 1e-23 | 945 - 1004 | 98 | 59 / 60 | plus |
Contig Sequence (831 bp)
>U35_583 831 Hv_44K_v2 GGAGAAGCCGGCCGCCAAGGGGAAGAAGGGAAAGGCAGGCAAGGACCCCAACAAGCCCAA GAGGGCGCCCAGCGCCTTCTTCGTCTTCATGGGCGAGTTCCGCGAGGAGTTCAAGCAGAA GAACCCCAAGAACAAGTCCGTCGCCGCCGTCGGCAAAGCGGCCGGTGAGAGGTGGAAGAG CTTGAGCGAATCCGAAAAGGCCCCCTTTGTTGCCAAGGCCAACAAGCTCAAGGGCGAGTA CAACAAGGCCATTGCTGCCTACAACAAGGGCGAGAGCACTGCTGCTGCCCCAAAGAAGGC CGCTGCCAAGGAGGTAGAGGAGGAAGACGAGGATGACGACGAGTGAAGAAGAAGCATCTT TGCTCCGGCGGACAAGGCGGGAGCTGCTGCGCGAGGCCCCTGAGCTGTGGGTGGTGGTTG TCATAAGGAGCCTATCCATCTCCACTAGAATTATCCCAAGTTTCACTTCACACCGTCATG TTGTTTTACCTTTTTCATGTCGTCCGTCCATCCGTCCTGCTATAACGGATAGCGCTCCCT GTTGGCGCCCCCGCCGGCGGGGTGCTCCTTGCGGTGTTAGGGTGTATGTCCTCCGCCGCT GGTGTGCCCCTGCCTGTACCTACCTAGATGGTCACTCTTTCCGTCCATTGTCATCGGCTA ACATTGTGATAATATCAGTTTGGGTAATGTTAGATTAAGCTGTTGTTGTCCAAAAAAAAA AAAGCTTGAATTCAAGCAGCTATGCCACAAGTCAGGTCTCTTGCAATTGTTGATTCATTG TAGCTTATGCTGAGTGTTCAGTTCTACATGTTCGTCTGTCCTTTGCAATCA
Homology of Contig U35_583 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |