barSeed - Barley Seed Development Database

Probe CUST_37083_PI390587928

Source Contig U35_584

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_37083_PI390587928	Hv_44K_v2	CATCGGCTAACATTGTGATAATATCAGTTTGGGTAATGTTAGATTAAGCTGTTGTTGTCC	875	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK366859	1582	2e-24	1523 - 1582	100	60 / 60	plus	ABC02173 ABC43476
JLOC1	JLOC1_52356.1	1376	8e-25	1039 - 1098	100	60 / 60	plus
Harvest21	ABC43476	355	3e-25	204 - 263	100	60 / 60	minus	ABC43476
Harvest21	ABC02176	1075	3e-25	940 - 999	100	60 / 60	plus
Harvest21	ABC02173	956	2e-21	872 - 924	100	53 / 53	plus	ABC02173
Harvest35	U35_584	1024	3e-25	876 - 935	100	60 / 60	plus
Harvest35	U35_583	831	3e-25	652 - 711	100	60 / 60	plus

Contig Sequence (1024 bp)

>U35_584 1024 Hv_44K_v2
CTTGTCTCCGTCTCCGTCTCCTTCCTTCCTTCCTTTCCCCAAACCAGACCAGGAGCGCCC
TCCCCACCCCAACCCAGGAAACCAGCCATGAAGGGGGCCAAATCCAAGGGCGCCGCCAAG
GCCGACACCAAGTTGGCGGTGAAGAGCAAGGGGGCGGAGAAGCCGGCCGCCAAGGGGAAG
AAGGGAAAGGCAGGCAAGGACCCCAACAAGCCCAAGAGGGCGCCCAGCGCCTTCTTCGTC
TTCATGGGCGAGTTCCGCGAGGAGTTCAAGCAGAAGAACCCCAAGAACAAGTCCGTCGCC
GCCGTCGGCAAAGCGGCCGGTGAGAGGTGGAAGAGCTTGAGCGAATCCGAAAAGGCCCCC
TTTGTTGCCAAGGCCAACAAGCTCAAGGGCGAGTACAACAAGGCCATTGCTGCCTACAAC
AAGGGCGAGAGCACTGCTGCTGCCCCAAAGAAGGCCGCTGCCAAGGAGGTAGAGGAGGAA
GATGAGGAGGAATCCGACAAGTCCAAGTCGGAGATCAATGACGACGATGACGATGAGGGT
AGCGATGAGGACGAGGATGACGACGAGTGAAGAAGAAGCATCTTTGCTCCGGCGGACAAG
GCGGGAGCTGCTGCGCGAGGCCCCTGAGCTGTGGGTGGTGGTTGTCATAAGGAGCCTATC
CATCTCCACTAGAATTATCCCAAGTTTCACTTCACACCGTCATGTTGTTTTACCTTTTTC
ATGTCGTCCGTCCATCCGTCCTGCTATAACGGATAGCGCTCCCTGTTGGCGCCCCCGCCG
GCGGGGTGCTCCTTGCGGTGTTAGGGCGTATGTCCTCCGCCGCGGGTGTGCCCCTGCCTG
TACCTACCTAGATGGTCACTCTTTCCGTCCATTGTCATCGGCTAACATTGTGATAATATC
AGTTTGGGTAATGTTAGATTAAGCTGTTGTTGTCCAAAAAAAAAAAAAAAAAAAAAAGTG
CGTCTATGTTTTATGCTTGGTTTGTTATGTGATTGTTGCCCTTGTGCAAAAAAAAAAAAA
AAAA

Homology of Contig U35_584 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None