barSeed - Barley Seed Development Database

Probe CUST_37077_PI390587928

Source Contig U35_588

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_37077_PI390587928	Hv_44K_v2	GTCGCCTTCTCTATTGACAACCGACAGATCGTCTCCGCGTCCCGCGACCGCACCATCAAG	450	GeneList: orange MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.770	0.831	2.343	2.393	0.991	0.798
Raw	923.438	1513.532	3882.167	6223.677	929.031	801.029

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_54589.1	1564	2e-24	683 - 742	100	60 / 60	plus	ABC01023 ABC01031 ABC43064 ABC49901
JLOC1	JLOC1_35141.1	1532	8e-25	609 - 668	100	60 / 60	plus
Harvest21	ABC01023	1513	3e-25	631 - 690	100	60 / 60	plus	ABC01023
Harvest35	U35_590	1326	3e-25	451 - 510	100	60 / 60	plus
Harvest35	U35_588	512	3e-25	451 - 510	100	60 / 60	plus

Contig Sequence (512 bp)

>U35_588 512 Hv_44K_v2
TCGAGCACTGTTGGCCTATGGATCTCTAGCCTGCGCCGCCGCCTCCACCGCACCCCCCGA
AAACCCTAGCGCTCGCTTCGCCACACCACCATGGCCGGCGCGCAGGAGTCCCTCGTGTAC
GCCGGTGTGATGCGTGGCCACAACGACGTGGTCACGGCCATCGCGACACCCATCGACAAC
TCGCCCTTCATCGTCTCCTCTTCCCGCGACAAGTCGCTGCTCGTCTGGGACCTCACCAAC
CCCATCCAGGCCACCCAGGACACCAGCTCCGAGTACGGCGTCCCCTTCCGCCGCCTCACA
GGCCACGGCCACTTTGTCCAGGACGTCGTCCTCAGCTCCGACGGCCAGTTCGCGCTCTCC
GGATCCTGGGACGGCGAGCTCCGCCTCTGGGACCTCTCCACCGGGGTCACCACCCGCCGC
TTCGTCGGCCACGAGAAGGACGTCCTCTCCGTCGCCTTCTCTATTGACAACCGACAGATC
GTCTCCGCGTCCCGCGACCGCACCATCAAGCT

Homology of Contig U35_588 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g49290.1	335	2e-83	protein\|WD repeat-containing protein, putative, expressed
Brachypodium v1_2	Bradi2g46840.1	332	3e-90
Arabidopsis v10	AT3G18130.1	326	4e-62	\| Symbols: RACK1C_AT \| receptor for activated C kinase 1C \| chr3:6211109-6212371 REVERSE LENGTH=326