barSeed - Barley Seed Development Database

Probe CUST_37075_PI390587928

Source Contig U35_589

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_37075_PI390587928	Hv_44K_v2	TTCGCACCAAGGCTTTGTTTTGTCTGCTGCTTTCAATATACTGCCCGCTATTTAGGTCTG	1276	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_56536.2	1458	2e-24	1261 - 1320	100	60 / 60	plus	ABC01023 ABC01031 ABC31916 ABC52661
JLOC1	JLOC1_36572.1	1430	8e-25	1128 - 1187	100	60 / 60	plus
Harvest21	ABC31916	439	4e-24	18 - 75	100	58 / 58	minus	ABC31916
Harvest35	U35_589	1357	3e-25	1277 - 1336	100	60 / 60	plus

Contig Sequence (1357 bp)

>U35_589 1357 Hv_44K_v2
TCGAGCACTGTTGGCCGGTCTCCCAACCCTCCCCCCCTTCGCCGCCGCCGCCGCCGCCAC
CTCCACCCTCCCCGCCGCGAGCTCCGCCCCACCAATCTCCCCGCGGCAGCCATGGCGAAC
ATGCAGGAGTCGCTCACCCTGGTGGGCACGATGCGCGGCCACAACGACGTGGTGACGGCG
ATCGCGGCGCCGATCGACAACTCGCCCTACATCGTGTCCGGCTCCCGCGACAAGTCGCTG
CTGGTCTGGGACCTCACCAACCCGGTCGCGTCCCTCGGCGACGGCACCGTCGGCACCGAC
TACGCCGTGCCCTTCCGCCGCCTCACCGGCCACGGCCACTTCGTCCAGGACGTCGTCATC
AGCTCCGACGGCCAGTTCGCGCTCTCGGGCTCCTGGGACGGCGAGCTCCGCCTCTGGGAC
CTCTCCACCGGCCTCACCACCCGCCGCTTCGTCGGCCACACCAAGGACGTCATCTCGGTC
GCCTTCTCCGTCGACAACCGCCAGATCGTCTCCGCCTCCCGCGACAACACCATCAAGCTC
TGGAACACCCTCGGCGAGTGTAAGTACACCATCGGCGGCGACATGGGCGGCGGCGAGGGC
CACACCGGCTGGGTCTCCTGCGTCAGGTTCTCTCCCAACATCCAGCAGCCCACCATCGTC
TCCGGCTCCTGGGACAAGACCGTCAAGGTCTGGAACCTCGCCAACTGCAAGCTCCGCTCC
ACCCTCGCCGGCCACGGTGGCTATGTCAATGCCGTCGCCGTCAGCCCCGATGGCTCGCTC
TGCGCCTCCGGTGGCAAGGACGGCGTCACGCTGCTTTGGGACCTGTCTGAGGGGAAGAGG
CTCTACCAGCTGGAAGCCGGCTCCATCATCCACTCGCTCTGCTTCTCGCCCAACCGCTAC
TGGCTCTGCGCTGCGACAGAGGAGTCTATCAAGATCTGGGACCTGGAGTCCAAGCATGTC
GTGCAGGACCTTAAGCCTGAAGTCCAGGTCTCCAAGAACCAGATGCTGTACTGCACAAGC
TTGAGCTGGAGCGCGGACGGAAGCACCCTCTACACCGGGTACACCGATGGAACTATCAGG
GTCTTCAAGATCCAGGCCGGGTTTGCCGGATATGCGTAGGAGTCTTGCTGGCCGAAGAGG
TTGTAATGACCGTCAAGTTTTTGACTGTTATAAGGCAGCATTGTATGCCTGGTACTTTCA
GCTTGAGTTACTATTTACTTTCTGCTTAGGTGATTTGTTGATGAGCACATTATGAGTACT
ATGGAAGGGGACCTGTTTCGCACCAAGGCTTTGTTTTGTCTGCTGCTTTCAATATACTGC
CCGCTATTTAGGTCTGCAAAAAAAAAAAAAAAAAAAA

Homology of Contig U35_589 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g49290.1	335	0.0	protein\|WD repeat-containing protein, putative, expressed
Brachypodium v1_2	Bradi2g17350.1	334	0.0
Arabidopsis v10	AT1G18080.1	327	3e-165	\| Symbols: ATARCA, RACK1A_AT, RACK1A \| Transducin/WD40 repeat-like superfamily protein \| chr1:6222325-6223901 FORWARD LENGTH=327