- Probe CUST_37073_PI390587928
- Source Contig U35_28406
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_37073_PI390587928 | Hv_44K_v2 | CAAATCATAAAGTTCTTCCTTCGCAGCTACAGGCACTCAAAGCAGCCATTCATGCTATTG | 496 | GeneList: green MasterList: Transcription_factors_Function_Probe_Module |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.067 | 1.528 | 1.407 | 1.141 | 0.333 | 0.322 |
| Raw | 80.384 | 187.637 | 143.431 | 196.340 | 18.139 | 20.219 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_6327.4 | 2337 | 2e-24 | 632 - 691 | 100 | 60 / 60 | minus | ABC17426 |
| MLOC | MLOC_6327.1 | 2597 | 2e-24 | 827 - 886 | 100 | 60 / 60 | minus | ABC17426 |
| MLOC | MLOC_6327.2 | 4033 | 2e-24 | 798 - 857 | 100 | 60 / 60 | minus | ABC17426 |
| MLOC | MLOC_6327.5 | 3442 | 2e-24 | 211 - 270 | 100 | 60 / 60 | minus | None |
| MLOC | MLOC_6327.3 | 4039 | 2e-24 | 798 - 857 | 100 | 60 / 60 | minus | ABC17426 |
| JLOC1 | JLOC1_4119.1 | 3982 | 8e-25 | 3126 - 3185 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC27252 | 667 | 3e-25 | 497 - 556 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_28406 | 667 | 3e-25 | 497 - 556 | 100 | 60 / 60 | plus |
Contig Sequence (667 bp)
>U35_28406 667 Hv_44K_v2 CTGCAGCAATTCTCACGAGGGGAAGATGGGTGTGTAGTTGCGCTCACAGCATCATCTGAT TCTTCTCGTTCCGAGACAAGCAGTGGAAACAGATATTCACCCAAGCCAAGTAGTGGAGAT GGAGCTTCACCCCTATCAGACATTGACAGTGCTTCTGTTCCAACATATCTAGCTGGTAAT CTTCAAAATGCATCATCTGCAATAGGAATTGAAGTTGGGAGGAGAAGTGATGAGAAGATG TCAAAGTGGGAAAGGTTGCAGGCGTTAGATAAATGGATCTGGACTTCTTTCTATTCTTCC CTTACTGCTGTTAAGTGTGGCAAGAGATCATTTAAGGAATCACTCGTTCATTGTGAAAGC TGTCATGATCTGTATTGGAGAGATGAAAGACATTGCAGAATATGCCACTCTACTTTTGAG GTTGGTTTTGACCTTGAAGAAAGATATGCTATACATGTGGCAACATGCAGGGAGCCTGAG GATTTGTACGATGTGCCAAATCATAAAGTTCTTCCTTCGCAGCTACAGGCACTCAAAGCA GCCATTCATGCTATTGAGGCACGCATGCCTACGGCAGCTTTTGCTGGTTTGTGGATGAAG TCTTCGCACAACCTGTGGGTTAAGCGGCTGCGACGAACATCATCATTACCTGAGCTNTTG CAGGTTC
Homology of Contig U35_28406 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | Bradi4g03302.1 | 644 | 9e-119 | |
| Arabidopsis v10 | AT4G12750.1 | 1131 | 2e-58 | Homeodomain-like transcriptional regulator | chr4:7498009-7503920 REVERSE LENGTH=1131 |