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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_37066_PI390587928Hv_44K_v2CAACCAAGCCTACATGGCACTGTAAAAACAAAATGGGAAAACGTATTTTTGTTCAGAAAA2046GeneList: None
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 4.8731.1630.6770.5531.2651.126
Raw 25.1937.8553.2004.1053.6593.596



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCAK36155924322e-242111 - 217010060 / 60plus ABC02490 ABC02491 ABC02492
MLOCMLOC_60412.125697e-23113 - 1729859 / 60minus ABC02490 ABC02491 ABC02492
JLOC1JLOC1_39393.126694e-232325 - 23849859 / 60plus
Harvest21ABC0249021903e-252047 - 210610060 / 60plusABC02490
Harvest35U35_422563e-252047 - 210610060 / 60plus



Contig Sequence (2256 bp)

>U35_4 2256 Hv_44K_v2
GATAATTCCTCTCCCTTCTCTGGTCTCCGTCGAGATCGAGGGCGTCCTTCTTCTCCTCCG
ACGATCTCTTTCCATGCCAACGATGGACACCACAGACCGCGGCTCCTACGCGCAGCTGCC
GGACGATGCCGAGGCCGGGACCGCGCACCGGCGCAGGACCGGGCCTCTCTGTGCCGCGAT
TCTCCTTACTTCGGCCGCGCTGCTGCTCGCTGTGGCCGCGCTGGCCAGCGTCAGGGTCGC
CGGCCAGCTGCCCGTAGCCGGCGTCATCATGTCCGGCCAGCCGACGACAGTAGACGTGGT
GCCGACGACGAGCACCAGCAGCCGGGGCCCGGAGTACGGCGTCTCGGAGAAGACGTCCGG
CGCCGGCGCCCACGGTGGCATGCTGGGCGCGGACGCCGGCAACGCGTTCCCGTGGAGCAA
TGCCATGCTCCAGTGGCAGCGCACGGGGTTCCACTTCCAGCCCGAGAAGAACTGGATGAA
CGACCCCAACGGTCCGGTTTACTACAAGGGGTGGTACCACCTCTTCTACCAGTACAACCC
CGACGGGGCCATTTGGGGCAACAAGATAGCGTGGGGCCATGCCGCCTCCCGCGACCTCCT
CCGCTGGCGCCACCTCCCCGTCGCCATGTCCCCGGACCAGTGGTACGACATCAACGGCGT
TTGGTCGGGCTCCGCTACCGTCCTTCCCGACGGCCGCATCGTCATGCTCTACACCGGCTC
CACCAACGCCTCCGTCCAGGTCCAATGCCTCGCCTTCCCCACTGACCCCTCGGACCCGTT
GCTAATCAACTGGACCAAGTATGAGAACAACCCGGTGATGTACCCGCCACCGGGTGTCGG
AGAGAAGGACTTCAGGGACCCCACCACTGCATGGTTTGACGGCTCCGACGACATGTGGCG
GCTCGTCATCGGCTCCAAGGATGACCGTCATGCCGGCATGGTCATGACCTACAAGACCAA
GGATTTCATGGACTATGAGCTTGTCCCTGGGGTGCTTCACCGGGTGCCGGGGACGGGGAT
GTGGGAGTGCATCGACCTATACCCGGTCGGAGGCGTGAGGGGCATCGACATGACGGACGC
GGTGACGGCAGCCTCCAACAATGGTGGCGGCGATGTGTTGCACGTGATGAAGGAGAGCTC
TGACGATGACAGACACGACTACTATGCGTTGGGGAGGTATGACGCGACCAAGAACACATG
GACGCCGCTGGACGTCGACGCCGATCTCGGCATCGGGCTGAGGTACGACTGGGGAAAGTT
CTACGCATCCAAGACCTTCTATGATCCGGCAAAGAAGAGGCGTGTGTTATGGGGGTGGGT
CGGCGAGACTGACTCCGAGCGCGCCGACGTCGCCAAGGGATGGGCCTCGCTTCAGTCGAC
CCCTCGCACGGTGGTGCTGGACACTAAGACAGGAAGCAACCTCCTTCAGTGGCCGGTGGA
CGAGGTGGAGACGCTCCGGACCAACTCCACTAACCTTGGCGGCGTCACCATTGACCGCGG
CTCCGTCTTTGCACTCAACCTTCATCGCGCCACCCAGCTAGACATCGAGGCCTCCTTCCG
CCTTGACCAGCTAGACATCGCCGCCTCCAACGAGGCCGATGTCGGCTACAATTGCAGCAC
CAGCGGTGGCGCCACAGGGCGGGGCATGCTCGGCCCATTTGGCCTCCTTGTGCTTGCCGA
TGCCAGGCGCCATGGAGGTGACGCGGAGCGCACCGCCGTCTACTTCTATGTCGCCAGGGG
CCTTGACGGTGGCTTGCATACACACTTCTGCCATGATGAGACGCGCTCATCTCATGCCAA
CGACATTGTCAAGAGGGTTGTAGGCAATACCGTGCCGGTGCTTGATGCCGAAGAGCTGTC
AGTGAGGGTGCTGGTGGATCATTCGATCGTTGAGAGCTTTGCGATGGGTGGTAGGTTGAC
CGCAACATCACGAGTGTACCCGACGGAGGCCATCTACGCCAACGCTGGGGTGTACCTCTT
CAACAATGCCACTGGAATTCGGGTCACCACCACTAGACTCGTGGTCCACGAGATGGATTC
TTCCTACAACCAAGCCTACATGGCACTGTAAAAACAAAATGGGAAAACGTATTTTTGTTC
AGAAAAAAAGGTGATAGATAGCACATTGTACGCATGTTTTTATACAAAGGAAGTTCTCTC
ATTTTTGTTGCTTAAAAAAAAAAAAAAAAACTGTGTTATCTGATAGGTCCCGACTTACCT
TGATGATGCATAATGATATAAAAAAAAAAAAAAAAA



Homology of Contig U35_4 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7LOC_Os02g01590.16630.0protein|glycosyl hydrolases, putative, expressed
Brachypodium v1_2Bradi3g00910.16720.0
Arabidopsis v10AT1G62660.16480.0Glycosyl hydrolases family 32 protein | chr1:23199949-23203515 FORWARD LENGTH=648