barSeed - Barley Seed Development Database

Probe CUST_37064_PI390587928

Source Contig U35_6

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_37064_PI390587928	Hv_44K_v2	GATCTATTGTTCTGTTCGTGCTGCAAGTGGATTGAATGTTTGATCTTTTGATCATTGTGT	908	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.535	1.392	1.159	0.773	0.212	0.186
Raw	9166.430	12762.977	9518.510	10027.357	964.929	922.891

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_60196.1	1956	2e-24	1835 - 1894	100	60 / 60	plus	ABC01243 ABC31827
MLOC	MLOC_60196.2	995	2e-24	881 - 940	100	60 / 60	plus	ABC01243 ABC31827
MLOC	MLOC_60196.3	1148	2e-24	1034 - 1093	100	60 / 60	plus	ABC01243 ABC01248 ABC31827
JLOC1	JLOC1_39229.1	1116	8e-25	897 - 956	100	60 / 60	plus
Harvest21	ABC01243	982	3e-25	893 - 952	100	60 / 60	plus	ABC01243
Harvest35	U35_6	994	3e-25	909 - 968	100	60 / 60	plus

Contig Sequence (994 bp)

>U35_6 994 Hv_44K_v2
GCCGCCTCGCCCTCTCTCGCCGAAGTGCCGCTCCGCTTCCGCCGAAGAATCACCAATGGC
CCCGACGTCGAAGATGGCGCTCGGCATAAAGCGGACGTCGAGGTCGCGCACCTACCACCG
CCGCGGGCTTTGGGCCATCAAGGCCAAGCACGGCGGCGCCTTCCCTAAGGCCGAGAAGCC
GGCCGCCGTCGCCGAGCCCAAGTTCTATCCCGCCGATGATGTCAAGCCACGCACCTTCAG
CACACGCAAGCCCCATCCCACCAAGCTCAGGTCGACCATCACGCCGGGCACGGTGCTGAT
CCTGCTCGCGGGGAGGTACATGGGGAAGCGCGTCGTGTTCCTCAAGCAGCTCAAGTCCGG
CCTGCTCCTCATCACTGGACCTTTCAAGATCAATGGCGTGCCAATCCGCAGAGTGAACCA
GGCTTATGTCATTTCCACATCCACAAGGCTCGACATCTCCAAGGTTAATATGCAAAAGTT
TGATGACAAGTACTTTGCTAGGGAGAAGAAGACTAGGGCAAAGAAGTCTGAGGGCGAGCT
GTTTGAGTCGGAGAAGGAGGCAACGAAGAATCTGCCCGACTTCAAGAAGGATGACCAGAA
GGTCATTGACACTGAGTTAATCAAGGCTATAGATGCTGTCCCAGACCTTAAAAGTTATCT
TGGTGCCCGGTTCTCCCTCAGGGATGGCGACAAGCCGCATGAGATGACCTTCTAAGTTAT
CTGGTACAAGTTTCAAGATCTGTGGAAAGTCTTTTTTCTCTAGCGTATGTTCTGGTTCTG
TACTTCTGATTTTTTTGGCTGGTTGGTGAAGCTTTGATTTCTACCTGTTAAATATTTTGA
GAAGATTATTGGAAGTAAAAAAAAAAAAAAAAACCACCCCCTCTATTGGCTCATTGCGAC
ATTTTCTTGATCTATTGTTCTGTTCGTGCTGCAAGTGGATTGAATGTTTGATCTTTTGAT
CATTGTGTATTATAAAAAAAAAAAAAAAAAAAAA

Homology of Contig U35_6 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g37862.1	220	1e-120	protein\|60S ribosomal protein L6, putative, expressed
Brachypodium v1_2	Bradi3g08900.1	220	4e-127
Arabidopsis v10	AT1G18540.1	233	1e-86	Ribosomal protein L6 family protein \| chr1:6377448-6378548 REVERSE LENGTH=233