barSeed - Barley Seed Development Database

Probe CUST_37047_PI390587928

Source Contig U35_7150

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_37047_PI390587928	Hv_44K_v2	GATCTCAACAACTCAATGAAGAACCAGTTGGATTCATCCATGTCCTCCCAGAAAGAAGCA	914	GeneList: cyan MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.129	1.716	1.354	0.616	0.475	0.340
Raw	382.009	410.716	323.550	212.079	62.459	49.597

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_6059.2	3031	2e-24	1130 - 1189	100	60 / 60	plus	ABC11606
MLOC	MLOC_6059.1	2585	2e-24	968 - 1027	100	60 / 60	plus	ABC11606
JLOC1	JLOC1_3930.1	3173	8e-25	968 - 1027	100	60 / 60	plus
Harvest21	ABC14318	977	3e-25	915 - 974	100	60 / 60	plus
Harvest35	U35_7150	977	3e-25	915 - 974	100	60 / 60	plus

Contig Sequence (977 bp)

>U35_7150 977 Hv_44K_v2
CACCTCCACCTCCACCGCTCCATCGCCACTGCTGGGGAGCACAGGACAAGAGACGACACG
CCGCTCGCTCTCCACTAGTAGTATTAACCCCTAATCCACCTAGTAATAATCCCCGGCCGG
CCATGGCGTCCTCCCTCACGCCGCGCAGCCAATTCCAGAAGAAGGAGAACCTGGGGAACG
CGCGGAGGGGGATGGGCTACAACGCGCCGCCGCGCCGCAACGTGCTCTCGGCCATCAACA
ACGGCGGCGGCGCCAACGCCGACCCGGCGCCCTCCGAGGCCGGCTCCGAGGCGCCCGCCT
TCGAGTTCAGCGGGAGGGACGACGTGGACCGCCTGCTCAACGAGAAGATGAAGGGCAAGT
CCAAGAACGACTACAAGGGGAGGACGGAGCAGATGAGCGAGTACATCAAGAGGCTCAGGG
CCTGCATCCGCTGGCTGGTGGAGCTGGAAGACGGCTACTTGGCCGAGCAGGAGAAGCTCC
GGGGGCAGATTGATTCAGACAATGCTCGTCACGCGGAGTTTGAGGCTCAGCTCAGTGGCG
CGCTTGAAGAGTTGAAAGCTGCAAACTTGGAGATGACAACACGGTGCGACTCACTGGAGG
AGAGCCTGAACAAGGAGAAGGCCGCCAGGCTGCTTGCTGTGGAATCCTATGAGAAGGAAA
GAGAAGAAAGGGAATCAGCCGAGGCTTCACGGGATGTGCTGACGGTCGATCTTGAAAGGG
TCACTCATGAGGCAAAGCGGTTTAGTGAGCAGCTAAAAATGGTCCAAGACACCAACAAAA
GACTTCAGGAATACAACTCCAGCTTGCAGCAATACAACAGTAATCTTCAAGCTGATACAT
CTAAGAATGGAGAAATCATCTCGAAGCTGCAAAGGGAGAAGAGTGCAATGATGGAAGCCA
TGACTAATCTGAAAGATCTCAACAACTCAATGAAGAACCAGTTGGATTCATCCATGTCCT
CCCAGAAAGAAGCAATT

Homology of Contig U35_7150 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g53760.2	789	2e-124	protein\|kinesin motor domain containing protein, putative, expressed
Brachypodium v1_2	Bradi5g22780.1	789	3e-126
Arabidopsis v10	None